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Report for CCDS55768.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55768.1 Public Homo sapiens 11 GLYATL1 24 110 108 CCDS HistoryNCBI Gene:92292Re-query CCDS DB by CCDS ID:55768.1Re-query CCDS DB by GeneID:92292See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55768.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000317391.8 ENSP00000322223.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000317391.8Link to Ensembl Protein Viewer:ENSP00000322223.4Re-query CCDS DB by Nucleotide ID:ENST00000317391Re-query CCDS DB by Protein ID:ENSP00000322223
Original member Current member EBI ENST00000532726.6 ENSP00000436116.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000532726.6Link to Ensembl Protein Viewer:ENSP00000436116.2Re-query CCDS DB by Nucleotide ID:ENST00000532726Re-query CCDS DB by Protein ID:ENSP00000436116
Original member Current member EBI ENST00000612196.1 ENSP00000479741.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000612196.1Link to Ensembl Protein Viewer:ENSP00000479741.1Re-query CCDS DB by Nucleotide ID:ENST00000612196Re-query CCDS DB by Protein ID:ENSP00000479741
Original member Current member NCBI NM_001220494.4 NP_001207423.1 Accepted alive Link to Nucleotide Sequence:NM_001220494.4Link to Protein Sequence:NP_001207423.1Re-query CCDS DB by Nucleotide ID:NM_001220494Re-query CCDS DB by Protein ID:NP_001207423Link to BLAST:NP_001207423.1
Original member Current member NCBI NM_001220496.4 NP_001207425.1 Accepted alive Link to Nucleotide Sequence:NM_001220496.4Link to Protein Sequence:NP_001207425.1Re-query CCDS DB by Nucleotide ID:NM_001220496Re-query CCDS DB by Protein ID:NP_001207425Link to BLAST:NP_001207425.1
Original member Current member NCBI NM_001354699.4 NP_001341628.1 Accepted alive Link to Nucleotide Sequence:NM_001354699.4Link to Protein Sequence:NP_001341628.1Re-query CCDS DB by Nucleotide ID:NM_001354699Re-query CCDS DB by Protein ID:NP_001341628Link to BLAST:NP_001341628.1
Original member Current member NCBI NM_001389711.2 NP_001376640.1 Accepted alive Link to Nucleotide Sequence:NM_001389711.2Link to Protein Sequence:NP_001376640.1Re-query CCDS DB by Nucleotide ID:NM_001389711Re-query CCDS DB by Protein ID:NP_001376640Link to BLAST:NP_001376640.1
Original member Current member NCBI NM_001389712.2 NP_001376641.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001389712.2Link to Protein Sequence:NP_001376641.1Re-query CCDS DB by Nucleotide ID:NM_001389712Re-query CCDS DB by Protein ID:NP_001376641Link to BLAST:NP_001376641.1
Original member Current member NCBI NM_001389713.2 NP_001376642.1 Accepted alive Link to Nucleotide Sequence:NM_001389713.2Link to Protein Sequence:NP_001376642.1Re-query CCDS DB by Nucleotide ID:NM_001389713Re-query CCDS DB by Protein ID:NP_001376642Link to BLAST:NP_001376642.1
Original member Current member NCBI NM_001389714.2 NP_001376643.1 Accepted alive Link to Nucleotide Sequence:NM_001389714.2Link to Protein Sequence:NP_001376643.1Re-query CCDS DB by Nucleotide ID:NM_001389714Re-query CCDS DB by Protein ID:NP_001376643Link to BLAST:NP_001376643.1
Original member Current member NCBI NM_001389715.2 NP_001376644.1 Accepted alive Link to Nucleotide Sequence:NM_001389715.2Link to Protein Sequence:NP_001376644.1Re-query CCDS DB by Nucleotide ID:NM_001389715Re-query CCDS DB by Protein ID:NP_001376644Link to BLAST:NP_001376644.1
Original member Current member NCBI NM_001389716.2 NP_001376645.1 Accepted alive Link to Nucleotide Sequence:NM_001389716.2Link to Protein Sequence:NP_001376645.1Re-query CCDS DB by Nucleotide ID:NM_001389716Re-query CCDS DB by Protein ID:NP_001376645Link to BLAST:NP_001376645.1
Original member Current member NCBI NM_001389717.2 NP_001376646.1 Accepted alive Link to Nucleotide Sequence:NM_001389717.2Link to Protein Sequence:NP_001376646.1Re-query CCDS DB by Nucleotide ID:NM_001389717Re-query CCDS DB by Protein ID:NP_001376646Link to BLAST:NP_001376646.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001207423.1 302 Q969I3-1 302 100% 0 0
NP_001207425.1 302 Q969I3-1 302 100% 0 0
NP_001341628.1 302 Q969I3-1 302 100% 0 0
NP_001376640.1 302 Q969I3-1 302 100% 0 0
NP_001376641.1 302 Q969I3-1 302 100% 0 0
NP_001376642.1 302 Q969I3-1 302 100% 0 0
NP_001376643.1 302 Q969I3-1 302 100% 0 0
NP_001376644.1 302 Q969I3-1 302 100% 0 0
NP_001376645.1 302 Q969I3-1 302 100% 0 0
NP_001376646.1 302 Q969I3-1 302 100% 0 0

Chromosomal Locations for CCDS 55768.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 58947088 58947165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58947858 58947965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58954770 58954896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58955176 58955353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58955610 58956027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (909 nt):
ATGATCCTACTGAATAACTCCCATAAGCTGCTGGCCCTATACAAATCCTTGGCCAGGAGCATCCCTGAGT
CCCTGAAGGTGTATGGCTCTGTGTATCACATCAATCACGGGAACCCCTTCAACATGGAGGTGCTGGTGGA
TTCCTGGCCTGAATATCAGATGGTTATTATCCGGCCTCAAAAGCAGGAGATGACTGATGACATGGATTCA
TACACAAACGTATATCGTATGTTCTCCAAAGAGCCTCAAAAATCAGAAGAAGTTTTGAAAAATTGTGAGA
TCGTAAACTGGAAACAGAGACTCCAAATCCAAGGTCTTCAAGAAAGTTTAGGTGAGGGGATAAGAGTGGC
TACATTTTCAAAGTCAGTGAAAGTAGAGCATTCGAGAGCACTCCTCTTGGTTACGGAAGATATTCTGAAG
CTCAATGCCTCCAGTAAAAGCAAGCTTGGAAGCTGGGCTGAGACAGGCCACCCAGATGATGAATTTGAAA
GTGAAACTCCCAACTTTAAGTATGCCCAGCTGGATGTCTCTTATTCTGGGCTGGTAAATGACAACTGGAA
GCGAGGGAAGAATGAGAGGAGCCTGCATTACATCAAGCGCTGCATAGAAGACCTGCCAGCAGCCTGTATG
CTCGGCCCAGAGGGAGTCCCGGTCTCATGGGTAACCATGGACCCTTCTTGTGAAGTAGGAATGGCCTACA
GCATGGAAAAATACCGAAGGACAGGCAACATGGCACGAGTGATGGTGCGATACATGAAATATCTGCGTCA
GAAGAATATTCCATTTTACATCTCTGTGTTGGAAGAAAATGAAGACTCCCGCAGATTTGTGGGGCAGTTT
GGTTTCTTTGAGGCCTCCTGTGAGTGGCACCAATGGACTTGCTACCCACAGAATCTAGTTCCATTTTAG

Translation (302 aa):
MILLNNSHKLLALYKSLARSIPESLKVYGSVYHINHGNPFNMEVLVDSWPEYQMVIIRPQKQEMTDDMDS
YTNVYRMFSKEPQKSEEVLKNCEIVNWKQRLQIQGLQESLGEGIRVATFSKSVKVEHSRALLLVTEDILK
LNASSKSKLGSWAETGHPDDEFESETPNFKYAQLDVSYSGLVNDNWKRGKNERSLHYIKRCIEDLPAACM
LGPEGVPVSWVTMDPSCEVGMAYSMEKYRRTGNMARVMVRYMKYLRQKNIPFYISVLEENEDSRRFVGQF
GFFEASCEWHQWTCYPQNLVPF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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