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Report for CCDS56143.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56143.1 Public Homo sapiens 2 XIRP2 24 110 108 CCDS HistoryNCBI Gene:129446Re-query CCDS DB by CCDS ID:56143.1Re-query CCDS DB by GeneID:129446See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56143.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409728.5 ENSP00000386619.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409728.5Link to Ensembl Protein Viewer:ENSP00000386619.1Re-query CCDS DB by Nucleotide ID:ENST00000409728Re-query CCDS DB by Protein ID:ENSP00000386619
Original member Current member NCBI NM_001199143.2 NP_001186072.1 Accepted alive Link to Nucleotide Sequence:NM_001199143.2Link to Protein Sequence:NP_001186072.1Re-query CCDS DB by Nucleotide ID:NM_001199143Re-query CCDS DB by Protein ID:NP_001186072Link to BLAST:NP_001186072.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186072.1 971 A4UGR9-6 971 100% 0 0

Chromosomal Locations for CCDS 56143.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 166903483 166903890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167135909 167136062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167184542 167184640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167210735 167210895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167218166 167218300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167239855 167239965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167240664 167240736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167241777 167241910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167254032 167254165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167257857 167259363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2916 nt):
ATGTTCCCAATGCAGAAGGGCTCCCTCAACCTCCTGAGGCAGAAATGGGAATCTTGTGATTATCAGAGAA
GTGAGTGTCATCCCAGGGACAGCCATTGTACAATTTTCCAGCCTCAGGAAAGCAAATTGCTTGCGCCTGA
AGGAGAGGTAGTATCAGCACCTCAATCTTTGGATCCCACAAGTCTGCCCTACAGTACAGGGGAAGAGATG
TGGAGTTCGAAGCCGGAAGAGAAGGATTCTGTGGACAAGAGTAACAACACCAGGGAATATGGTCGGCCAG
AAGTGCTGAAGGAGGATTCCCTGAGCAGTCGGCGCAGGATTGAACGCTTTTCCATTGCCCTTGATGAGCT
GAGGAGTGTGTTTGAGGCTCCTAAGAGTGGAAACAAACCAGCTGAGTACGGTGGAAAGGAAGTGGAAATT
GAGCGAAGTTTGTGCTCGCCAGCTTTTAAGAGTCACCCTGGGAGCCAGCTGGAGGATTCTGTGAAAGATT
CAGACAAGAAAGGCAAGGAAACATCTTTTGACAAGATGTCACCTGAAAGTGGTCACAGCCGCATCTTTGA
AGCAGTGTTCTCCACGGACCAAGCCCAGATTCTCAGGCTCCACCTGCATCCAAAATTGACAAAGACCCCC
AAGAACAGCCTCAAATCCTCAACTTATATTTCGACTGCTGGCCCTAATAAGCCTGAGAGTGGATTTGCAG
AAGACAGTGCTGCTCGGGGCGAGGGTGTGTCAGACCTCCACGAAGTGGTCTCCCTGAAGGAGCGGATGGC
GAGGTACCAGGCAGCTGTTTCCAGGGGTGACTGCCGCAGCTTCTCTGCTAATATGATGGAAGAATCAGAA
ATGTGCGCAGTGCCTGGTGGTTTGGCCAAGGTGAAGAAACAATTTGAGGACGAAATTACTTCTTCCCGTA
ATACCTTTGCTCAATACCAATATCAACATCAGAACAGATCTGAGCAGGAGGCAATTCATAGCAGCCAGGT
TGGCACTTCAAGAAGCAGCCAGGAAATGGCAAGAAATGAACAAGAAGGGTCCAAAGTACAGAAAATTGAT
GTTCATGGAACAGAAATGGTCTCTCATCTTGAAAAGCACACCGAGGAAGTAAACCAAGCATCTCAGTTTC
ATCAATATGTTCAAGAAACTGTCATTGATACACCTGAGGATGAAGAGATTCCAAAGGTTTCGACTAAGTT
GTTAAAAGAGCAGTTTGAAAAGTCTGCCCAGGAAAAGATCCTTTATTCTGACAAAGAGATGACAACCCCA
GCCAAGCAGATTAAGAAGCTGCTGCTCCAAGACAAGGAAATATGTATACTTTGTCAAAAGACAGTTTATC
CAATGGAGTGCCTAGTGGCAGACAAGCAGAATTTTCATAAGTCCTGCTTCCGATGCCACCATTGCAACAG
TAAACTAAGTTTGGGAAATTATGCATCACTTCATGGACAAATATACTGTAAACCTCACTTTAAACAACTT
TTCAAATCCAAAGGAAATTATGATGAAGGTTTTGGACATAAGCAGCATAAAGATAGATGGAACTGCAAAA
ACCAAAGCAGATCAGTGGACTTTATTCCTAATGAAGAACCAAATATGTGTAAAAATATTGCAGAAAACAC
CCTTGTACCTGGAGATCGTAATGAACATTTAGATGCTGGTAACAGTGAAGGGCAAAGGAATGATTTGAGA
AAATTAGGGGAAAGGGGAAAATTAAAAGTCATTTGGCCTCCTTCCAAGGAGATCCCTAAGAAAACCTTAC
CCTTTGAGGAAGAGCTCAAAATGAGTAAACCTAAGTGGCCACCTGAAATGACAACCCTGCTATCCCCTGA
ATTTAAAAGTGAATCTCTGCTAGAAGATGTTAGAACTCCAGAAAATAAAGGACAAAGACAAGATCACTTT
CCATTTTTGCAGCCTTATCTACAGTCCACCCATGTTTGTCAGAAAGAGGATGTTATAGGAATCAAAGAAA
TGAAAATGCCTGAAGGAAGAAAAGATGAAAAGAAGGAAGGAAGGAAGAATGTGCAAGATAGGCCGAGTGA
AGCTGAAGACACAAAGAGTAACAGGAAAAGTGCTATGGATCTTAATGACAACAATAATGTGATTGTGCAG
AGTGCTGAAAAGGAGAAAAATGAAAAAACTAACCAAACTAATGGTGCAGAAGTTTTACAGGTTACTAACA
CTGATGATGAGATGATGCCAGAAAATCATAAAGAAAATTTGAATAAGAATAATAATAACAATTATGTAGC
AGTCTCATATCTGAATAATTGCAGGCAGAAGACATCTATTTTAGAATTTCTTGATCTATTACCCTTGTCG
AGTGAAGCAAATGACACTGCAAATGAATATGAAATTGAGAAGTTAGAAAATACATCTAGAATCTCAGAGT
TACTTGGTATATTTGAATCTGAAAAGACTTATTCGAGGAATGTACTAGCAATGGCTCTGAAGAAACAGAC
TGACAGAGCAGCTGCTGGCAGTCCTGTGCAGCCTGCTCCAAAACCAAGCCTCAGCAGAGGCCTTATGGTA
AAGGGGGGAAGTTCAATCATCTCTCCTGATACAAATCTCTTAAACATTAAAGGAAGCCATTCAAAGAGCA
AAAATTTACACTTTTTCTTTTCTAACACCGTGAAAATCACTGCATTTTCCAAGAAAAATGAGAACATTTT
CAATTGTGATTTAATAGATTCTGTAGATCAAATTAAAAATATGCCATGCTTGGATTTAAGGGAATTTGGA
AAGGATGTTAAACCTTGGCATGTTGAAACAACAGAAGCTGCCCGCAATAATGAAAACACAGGTTTTGATG
CTCTGAGCCATGAATGTACAGCTAAGCCTTTGTTTCCCAGAGTGGAGGTGCAGTCAGAACAACTCACGGT
GGAAGAGCAGATTAAAAGAAACAGGTGCTACAGTGACACTGAGTAA

Translation (971 aa):
MFPMQKGSLNLLRQKWESCDYQRSECHPRDSHCTIFQPQESKLLAPEGEVVSAPQSLDPTSLPYSTGEEM
WSSKPEEKDSVDKSNNTREYGRPEVLKEDSLSSRRRIERFSIALDELRSVFEAPKSGNKPAEYGGKEVEI
ERSLCSPAFKSHPGSQLEDSVKDSDKKGKETSFDKMSPESGHSRIFEAVFSTDQAQILRLHLHPKLTKTP
KNSLKSSTYISTAGPNKPESGFAEDSAARGEGVSDLHEVVSLKERMARYQAAVSRGDCRSFSANMMEESE
MCAVPGGLAKVKKQFEDEITSSRNTFAQYQYQHQNRSEQEAIHSSQVGTSRSSQEMARNEQEGSKVQKID
VHGTEMVSHLEKHTEEVNQASQFHQYVQETVIDTPEDEEIPKVSTKLLKEQFEKSAQEKILYSDKEMTTP
AKQIKKLLLQDKEICILCQKTVYPMECLVADKQNFHKSCFRCHHCNSKLSLGNYASLHGQIYCKPHFKQL
FKSKGNYDEGFGHKQHKDRWNCKNQSRSVDFIPNEEPNMCKNIAENTLVPGDRNEHLDAGNSEGQRNDLR
KLGERGKLKVIWPPSKEIPKKTLPFEEELKMSKPKWPPEMTTLLSPEFKSESLLEDVRTPENKGQRQDHF
PFLQPYLQSTHVCQKEDVIGIKEMKMPEGRKDEKKEGRKNVQDRPSEAEDTKSNRKSAMDLNDNNNVIVQ
SAEKEKNEKTNQTNGAEVLQVTNTDDEMMPENHKENLNKNNNNNYVAVSYLNNCRQKTSILEFLDLLPLS
SEANDTANEYEIEKLENTSRISELLGIFESEKTYSRNVLAMALKKQTDRAAAGSPVQPAPKPSLSRGLMV
KGGSSIISPDTNLLNIKGSHSKSKNLHFFFSNTVKITAFSKKNENIFNCDLIDSVDQIKNMPCLDLREFG
KDVKPWHVETTEAARNNENTGFDALSHECTAKPLFPRVEVQSEQLTVEEQIKRNRCYSDTE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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