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Report for CCDS56279.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56279.1 Public Homo sapiens 3 ATP2C1 24 110 108 CCDS HistoryNCBI Gene:27032Re-query CCDS DB by CCDS ID:56279.1Re-query CCDS DB by GeneID:27032See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56279.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000504381.5 ENSP00000425320.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000504381.5Link to Ensembl Protein Viewer:ENSP00000425320.2Re-query CCDS DB by Nucleotide ID:ENST00000504381Re-query CCDS DB by Protein ID:ENSP00000425320
Original member Current member NCBI NM_001199182.2 NP_001186111.1 Accepted alive Link to Nucleotide Sequence:NM_001199182.2Link to Protein Sequence:NP_001186111.1Re-query CCDS DB by Nucleotide ID:NM_001199182Re-query CCDS DB by Protein ID:NP_001186111Link to BLAST:NP_001186111.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186111.1 944 P98194-8 944 100% 0 0

Chromosomal Locations for CCDS 56279.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 130850821 130850928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130930416 130930526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130934622 130934711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130937428 130937463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130940630 130940691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130941591 130941699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130953821 130953976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130955012 130955080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130956104 130956179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130959275 130959341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130963971 130964095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130964948 130965045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130967145 130967240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130967330 130967419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130969292 130969396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130975332 130975488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130979249 130979419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130980582 130980679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130992951 130993001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130993932 130994098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130996043 130996111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130996680 130996796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130997606 130997753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130998294 130998389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130999518 130999659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 131001220 131001344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 131016152 131016247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2835 nt):
ATGGATAGTCTGTTGCCTCCATCTAGATTCTCTTATTTCAAAAAATATCCTCTCCATGCAATTAGGAGAT
ATTTATCGACGCTGAGAAACCAAAGAGCCGAAGAACAGGTTGCACGTTTTCAAAAAATACCTAATGGTGA
AAATGAGACAATGATTCCTGTATTGACATCAAAAAAAGCAAGTGAATTACCAGTCAGTGAAGTTGCAAGC
ATTCTCCAATTTAAAAATCCCCTTATTATGCTGCTTCTGGCTTCTGCAGTCATCAGTGTTTTAATGCATC
AGTTTGATGATGCCGTCAGTATCACTGTGGCAATACTTATCGTTGTTACAGTTGCCTTTGTTCAGGAATA
TCGTTCAGAAAAATCTCTTGAAGAATTGAGTAAACTTGTGCCACCAGAATGCCATTGTGTGCGTGAAGGA
AAATTGGAGCATACACTTGCCCGAGACTTGGTTCCAGGTGATACAGTTTGCCTTTCTGTTGGGGATAGAG
TTCCTGCTGACTTACGCTTGTTTGAGGCTGTGGATCTTTCCATTGATGAGTCCAGCTTGACAGGTGAGAC
AACGCCTTGTTCTAAGGTGACAGCTCCTCAGCCAGCTGCAACTAATGGAGATCTTGCATCGAGAAGTAAC
ATTGCCTTTATGGGAACACTGGTCAGATGTGGCAAAGCAAAGGGTGTTGTCATTGGAACAGGAGAAAATT
CTGAATTTGGGGAGGTTTTTAAAATGATGCAAGCAGAAGAGGCACCAAAAACCCCTCTGCAGAAGAGCAT
GGACCTCTTAGGAAAACAACTTTCCTTTTACTCCTTTGGTATAATAGGAATCATCATGTTGGTTGGCTGG
TTACTGGGAAAAGATATCCTGGAAATGTTTACTATTAGTGTAAGTTTGGCTGTAGCAGCAATTCCTGAAG
GTCTCCCCATTGTGGTCACAGTGACGCTAGCTCTTGGTGTTATGAGAATGGTGAAGAAAAGGGCCATTGT
GAAAAAGCTGCCTATTGTTGAAACTCTGGGCTGCTGTAATGTGATTTGTTCAGATAAAACTGGAACACTG
ACGAAGAATGAAATGACTGTTACTCACATATTTACTTCAGATGGTCTGCATGCTGAGGTTACTGGAGTTG
GCTATAATCAATTTGGGGAAGTGATTGTTGATGGTGATGTTGTTCATGGATTCTATAACCCAGCTGTTAG
CAGAATTGTTGAGGCGGGCTGTGTGTGCAATGATGCTGTAATTAGAAACAATACTCTAATGGGGAAGCCA
ACAGAAGGGGCCTTAATTGCTCTTGCAATGAAGATGGGTCTTGATGGACTTCAACAAGACTACATCAGAA
AAGCTGAATACCCTTTTAGCTCTGAGCAAAAGTGGATGGCTGTTAAGTGTGTACACCGAACACAGCAGGA
CAGACCAGAGATTTGTTTTATGAAAGGTGCTTACGAACAAGTAATTAAGTACTGTACTACATACCAGAGC
AAAGGGCAGACCTTGACACTTACTCAGCAGCAGAGAGATGTGTACCAACAAGAGAAGGCACGCATGGGCT
CAGCGGGACTCAGAGTTCTTGCTTTGGCTTCTGGTCCTGAACTGGGACAGCTGACATTTCTTGGCTTGGT
GGGAATCATTGATCCACCTAGAACTGGTGTGAAAGAAGCTGTTACAACACTCATTGCCTCAGGAGTATCA
ATAAAAATGATTACTGGAGATTCACAGGAGACTGCAGTTGCAATCGCCAGTCGTCTGGGATTGTATTCCA
AAACTTCCCAGTCAGTCTCAGGAGAAGAAATAGATGCAATGGATGTTCAGCAGCTTTCACAAATAGTACC
AAAGGTTGCAGTATTTTACAGAGCTAGCCCAAGGCACAAGATGAAAATTATTAAGTCGCTACAGAAGAAC
GGTTCAGTTGTAGCCATGACAGGAGATGGAGTAAATGATGCAGTTGCTCTGAAGGCTGCAGACATTGGAG
TTGCGATGGGCCAGACTGGTACAGATGTTTGCAAAGAGGCAGCAGACATGATCCTAGTGGATGATGATTT
TCAAACCATAATGTCTGCAATCGAAGAGGGTAAAGGGATTTATAATAACATTAAAAATTTCGTTAGATTC
CAGCTGAGCACGAGTATAGCAGCATTAACTTTAATCTCATTGGCTACATTAATGAACTTTCCTAATCCTC
TCAATGCCATGCAGATTTTGTGGATCAATATTATTATGGATGGACCCCCAGCTCAGAGCCTTGGAGTAGA
ACCAGTGGATAAAGATGTCATTCGTAAACCTCCTCGCAACTGGAAAGACAGCATTTTGACTAAAAACTTG
ATACTTAAAATACTTGTTTCATCAATAATCATTGTTTGTGGGACTTTGTTTGTCTTCTGGCGTGAGCTAC
GAGACAATGTGATTACACCTCGAGACACAACAATGACCTTCACATGCTTTGTGTTTTTTGACATGTTCAA
TGCACTAAGTTCCAGATCCCAGACCAAGTCTGTGTTTGAGATTGGACTCTGCAGTAATAGAATGTTTTGC
TATGCAGTTCTTGGATCCATCATGGGACAATTACTAGTTATTTACTTTCCTCCGCTTCAGAAGGTTTTTC
AGACTGAGAGCCTAAGCATACTGGATCTGTTGTTTCTTTTGGGTCTCACCTCATCAGTGTGCATAGTGGC
AGAAATTATAAAGAAGGTTGAAAGGAGCAGGGAAAAGATCCAGAAGCATGTTAGTTCGACATCATCATCT
TTTCTTGAAGTCTGGCTCTGGGAGAGGAGTGGACAGCAGCTGGTTGAGATACATCCCCATCTGGAGACAG
GACTGCCACTGACAGAAGATGTGAGCTGTGTCTAA

Translation (944 aa):
MDSLLPPSRFSYFKKYPLHAIRRYLSTLRNQRAEEQVARFQKIPNGENETMIPVLTSKKASELPVSEVAS
ILQFKNPLIMLLLASAVISVLMHQFDDAVSITVAILIVVTVAFVQEYRSEKSLEELSKLVPPECHCVREG
KLEHTLARDLVPGDTVCLSVGDRVPADLRLFEAVDLSIDESSLTGETTPCSKVTAPQPAATNGDLASRSN
IAFMGTLVRCGKAKGVVIGTGENSEFGEVFKMMQAEEAPKTPLQKSMDLLGKQLSFYSFGIIGIIMLVGW
LLGKDILEMFTISVSLAVAAIPEGLPIVVTVTLALGVMRMVKKRAIVKKLPIVETLGCCNVICSDKTGTL
TKNEMTVTHIFTSDGLHAEVTGVGYNQFGEVIVDGDVVHGFYNPAVSRIVEAGCVCNDAVIRNNTLMGKP
TEGALIALAMKMGLDGLQQDYIRKAEYPFSSEQKWMAVKCVHRTQQDRPEICFMKGAYEQVIKYCTTYQS
KGQTLTLTQQQRDVYQQEKARMGSAGLRVLALASGPELGQLTFLGLVGIIDPPRTGVKEAVTTLIASGVS
IKMITGDSQETAVAIASRLGLYSKTSQSVSGEEIDAMDVQQLSQIVPKVAVFYRASPRHKMKIIKSLQKN
GSVVAMTGDGVNDAVALKAADIGVAMGQTGTDVCKEAADMILVDDDFQTIMSAIEEGKGIYNNIKNFVRF
QLSTSIAALTLISLATLMNFPNPLNAMQILWINIIMDGPPAQSLGVEPVDKDVIRKPPRNWKDSILTKNL
ILKILVSSIIIVCGTLFVFWRELRDNVITPRDTTMTFTCFVFFDMFNALSSRSQTKSVFEIGLCSNRMFC
YAVLGSIMGQLLVIYFPPLQKVFQTESLSILDLLFLLGLTSSVCIVAEIIKKVERSREKIQKHVSSTSSS
FLEVWLWERSGQQLVEIHPHLETGLPLTEDVSCV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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