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Report for CCDS56346.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56346.1 Public Homo sapiens 4 SPOCK3 24 110 108 CCDS HistoryNCBI Gene:50859Re-query CCDS DB by CCDS ID:56346.1Re-query CCDS DB by GeneID:50859See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56346.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000510741.5 ENSP00000426716.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000510741.5Link to Ensembl Protein Viewer:ENSP00000426716.1Re-query CCDS DB by Nucleotide ID:ENST00000510741Re-query CCDS DB by Protein ID:ENSP00000426716
Original member Current member NCBI NM_001204356.2 NP_001191285.1 Accepted alive Link to Nucleotide Sequence:NM_001204356.2Link to Protein Sequence:NP_001191285.1Re-query CCDS DB by Nucleotide ID:NM_001204356Re-query CCDS DB by Protein ID:NP_001191285Link to BLAST:NP_001191285.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001191285.1 393 Q9BQ16-8 393 100% 0 0

Chromosomal Locations for CCDS 56346.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 166734921 166735090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 166737467 166737604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 166741997 166742059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 166754508 166754729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 166889130 166889244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 166912620 166912743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 167000349 167000463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 167062492 167062537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 167233985 167234173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1182 nt):
ATGCTCAAGGTGTCAGCCGTACTGTGTGTGTGTGCAGCCGCTTGGTGCAGTCAGTCTCTCGCAGCTGCCG
CG
GCGGTGGCTGCAGCCGGGGGGCGGTCGGACGGCGGTAATTTTCTGGATGATAAACAATGGCTCACCAC
A
ATCTCTCAGTATGACAAGGAAGTCGGACAGTGGAACAAATTCCGAGACGATGATTATTTCCGCACTTGG
AGT
CCAGGAAAACCCTTCGATCAGGCTTTAGATCCAGCTAAGGATCCATGCTTAAAGATGAAATGTAGTC
GC
CATAAAGTATGCATTGCTCAAGATTCTCAGACTGCAGTCTGCATTAGTCACCGGAGGCTTACACACAG
G
ATGAAAGAAGCAGGAGTAGACCATAGGCAGTGGAGGGGTCCCATATTATCCACCTGCAAGCAGTGCCCA
GTG
GTCTATCCCAGCCCTGTTTGTGGTTCAGATGGTCATACCTACTCTTTTCAGTGCAAACTAGAATATC
AG
GCATGTGTCTTAGGAAAACAGATCTCAGTCAAATGTGAAGGACATTGCCCATGTCCTTCAGATAAGCC
C
ACCAGTACAAGCAGAAATGTTAAGAGAGGATTCGATACCAGCATCTTGCCAATTTGCAAGGACTCACTT
GGC
TGGATGTTTAACAGACTTGATACAAACTATGACCTGCTATTGGACCAGTCAGAGCTCAGAAGCATTT
AC
CTTGATAAGAATGAACAGTGTACCAAGGCATTCTTCAATTCTTGTGACACATACAAGGACAGTTTAAT
A
TCTAATAATGAGTGGTGCTACTGCTTCCAGAGACAGCAAGACCCACCTTGCCAGACTGAGCTCAGCAAT
ATT
CAGAAGCGGCAAGGGGTAAAGAAGCTCCTAGGACAGTATATCCCCCTGTGTGATGAAGATGGTTACT
AC
AAGCCAACACAATGTCATGGCAGTGTTGGACAGTGCTGGTGTGTTGACAGATATGGAAATGAAGTCAT
G
GGATCCAGAATAAATGGTGTTGCAGATTGTGCTATAGATTTTGAGATCTCCGGAGATTTTGCTAGTGGC
GAT
TTTCATGAATGGACTGATGATGAGGATGATGAAGACGATATTATGAATGATGAAGATGAAATTGAAG
AT
GATGATGAAGATGAAGGGGATGATGATGATGGTGGTGATGACCATGATGTATACATTTGA


Translation (393 aa):
MLKVSAVLCVCAAAWCSQSLAAAAAVAAAGGRSDGGNFLDDKQWLTTISQYDKEVGQWNKFRDDDYFRTW
S
PGKPFDQ
ALDPAKDPCLKMKCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPILSTCKQCP
V
VYPSPVCGSDGHTYSFQ
CKLEYQACVLGKQISVKCEGHCPCPSDKPTSTSRNVKRGFDTSILPICKDSL
G
WMFNRLDTNYDLLLDQSELRSIYLDKNEQCTKAFFNSCDTYKDSLISNNEWCYCFQRQQ
DPPCQTELSN
I
QKRQGVKKLL
GQYIPLCDEDGYYKPTQCHGSVGQCWCVDRYGNEVMGSRINGVADCAIDFEISGDFASG
D
FHEWTDDEDDEDDIMNDEDEIEDDDEDEGDDDDGGDDHDVYI




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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