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Report for CCDS56659.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56659.1 Public Mus musculus 1 Ifi207 23 108 98 CCDS HistoryNCBI Gene:226691Re-query CCDS DB by CCDS ID:56659.1Re-query CCDS DB by GeneID:226691See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56659.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042610.14 ENSMUSP00000048129.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042610.14Link to Ensembl Protein Viewer:ENSMUSP00000048129.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000042610Re-query CCDS DB by Protein ID:ENSMUSP00000048129
Original member Current member NCBI NM_001204910.1 NP_001191839.1 Accepted alive Link to Nucleotide Sequence:NM_001204910.1Link to Protein Sequence:NP_001191839.1Re-query CCDS DB by Nucleotide ID:NM_001204910Re-query CCDS DB by Protein ID:NP_001191839Link to BLAST:NP_001191839.1

Chromosomal Locations for CCDS 56659.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 173723732 173723752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173724934 173725122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173727409 173727825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173728882 173730540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173732275 173732442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173735096 173735313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173736187 173736451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2937 nt):
ATGGTGAAAGAATATAAGAGAATTGTTCTGCTGAAAGGACTTGAATGTATCAATAAGCATCATTTTAGCT
TATTTAAGTCATTGCTGGCCAGAGATTTAAGTCTGGAAAGAGACAACCAAGAGAAATACTCCACAATTCA
GATTGCTAACATGATGGAAGAGAAATTCAAACCCGATGCTGGATTGGGTGAACTGATCGAGTTTTGTGAA
AAAGTACCAGCTCTTAGAAAACGTGCTGAAATTCTTAAAAAAGAGAGATCAGAAGTAACAGGAGAAACAT
CACTGGAAAAAAATGGTCAAGAAGCAGGTCCTGCAACACCTACATCAACTACAAGCCACATGCTAACATC
TGAAAGAGGAGAGACTTCCGCAACCCAGGAAGAGACTTCCACAGCTCAGGGGGAGACTTCCACAGCTCAG
GCGGGGACTTCCACAGCTCAGGCGGGGACTTCCACAGCTCAGGCGGGGACTTCTACAGCCCAGACAAAGA
GAAAACAAATCACAAAAAGTGAAGGTGAAAAGAAAAAGAAGCTCACCCAGGAGCAGGCTCAGCTTTCAGA
ACCTTTAGGAACCGATAGAAAAAAAGATGAAGATTGTCTCCAGACTCCTCTTATGGCACCACCAACACCA
CCCAGCAGTTCCTCAAACAAGAAACAGAAAAACACAACCATCCCAAAACATGGTATCATAAAGACAAGGG
GTCCTCAGGAAATTCATCAACTTGTAGAATTTTCATCATCCAGCAACTTCCCAGCTGTAAGTGAACTCCC
GACCTTTGAAGGACTTTCAGCAATTCCTTCTAGCAGACTTCAGTCTTCTCAGAAGCCTCTAGAAGCTCAC
TTGGATTTAAAGATGTCTCCAAGCTCTTCAAGATCACCTTGCCATAATCTTTCAGTGTCTCTAACGTCAG
ACTCAAATGTTCATCTGAACTCTAATGCACATTCCATCCAGTCCAGTGGTGCCCAGGTTCCTTATGTACC
ATCAGCAACAGGATTCAGTAATGTCAGGGTTCCTCTTATGCCTTCAAAAACAGTGTCCTGCTCTTCCATT
GCTCCTCACATGTCTTTAATAAAGGTACCCAGCAGTATCCAGGACCTTCACCTTCCTACACAAGAAGCAT
TCAGTAGCACAGAGGATCCTCACAATCAAGCAATAGCATCCAAAAATCTCCAAACTACTAAAATGCCTCC
AACAACACTGACAAGCAAAGCCCAGCTCCTAAAGATGCCTTCTTCAGCAACATCATCCAGCAGTGTTCAG
GTTTCTCATACTCTAGCAACTGTGTCCAGAAGCACCTCTGTCAAACAGATACTTCAAACAACAAGATCCA
GTAGCATTCAGATTCTTAACTCTGCTACAGTAAAAGCATCCAAGAATGTCCAGGCCTCTCAAGTATCTTT
ACCAACAGAACCCAATTATTTCCAGGCTTCTGTGGCACCTCCATCAGCAACACCCAGCAGTTCTACATCT
CTTCTGGTACCTTTGTCAAAAGCCACAAGCAGAGCCCAGAGTACTCAAATTCATCCAGAAAGAGAATCCA
TTTGTGTCCAGGCTCATCGTGCTCCTTCATCAACAGTGTCCAGAAATAAGTGCACCACTCAGTTGACACA
AGGGGCAGCATCCGGTACTGGGAAGGCCTTTTCCCTCCCTGAAGTAAAAGCATCCATGAAAGTCCAAGCA
CCTCAGGTGTCTTCCCCAACAGCATCCATGAGTATCCTGAATCCAAATGCAACCCCCCCAACAACATCCA
GCAATCTCCTGGCTCCACATGCAACTTCATCAACAACATATAGCATCCTCCTGGCTCCATATGCAACTCT
ATCAACAGCATCTAGCAACCTCCTGGCTCCACAAGCAACTGTATCAACAGCATCTAGCAACCTCCTGGCT
CCACATGCAACTCTATCAACAACATCTAGCAACCTCCTGGCTCCACATGCAACTCTATCAACAACATCTA
GCAACCTCCTGGCTCCACATGCAACTTCATCAACAGCATCTAGCAACCTCCTGGCTCCACAAGCAACTCT
ATCAACACCATCCAATAGTCTCCTGGCTCCACATGCAACTCTATCAACAACATCTAGCAACCTCCTGGCT
CCACATGCAACTTCATCAACAGCATCTAGCAACCTCCTGGCTCCACATGCAACTTCATCAACAGCATCTA
GCAACCTCCTGGCTCCACATGCAACTCTACCAACAGCATCCAGCAATCTTCTGGCTCCACAGTTGTGTCC
AGTAACAGCATCTAGGGCTCTCAGTGCTATTCCAGTGCCTTCAGCAACAGTACACAGCAGTCCATCCTGG
ACACCAAGGAGAGGAACTGTACCAAAGGAGCCTTCTAGGGAAGAAGGTCACCATCAAGGTCCCAAACAAG
TGATGGTGCTGAAAGTAACAGAACCATTTACATATGACCTGGAAGAAGATAAAAGGATGTTTCATGCTAC
AGTGGCTACTGAAACTGAGTTCTTCAGAGTGAAGGTTTTTGACACAGCTCTAATAAGCAAGTTCATCCCA
AGAAATATCATTGCCATATCAGATTATTTTGGGTGCAATGGATTTTTGGAGATATACAGAGCTTCCTGTG
TCTCTGATGTGAACGTTAACCCAACAATGGTCATCTCAAATACACTGAGACAAAGAGCTAATGCAACTCC
TAAAATTTCTTATCTTTTCTCACAAGCAAAGGGGACATTTGTGAGTGGAGAGTACTTAGTAATTAAGAAA
ACTGAGAGGAATAAAGCCATTTACTATGGAGTTAAAGATAATACAGGGAAAATGGAAGTGATGGTTTATG
GACGACTCACCAATATCACGTGTGAACCAGGCAATAAACTTAGACTTGTCTGCTTTGAATTGAATCTCAT
TGAAGATGGGTTGCAGCTGAAGTCTGTAAGGCACAGTTACATGCAGGTCATCAATGCTAGAAGGTGA

Translation (978 aa):
MVKEYKRIVLLKGLECINKHHFSLFKSLLARDLSLERDNQEKYSTIQIANMMEEKFKPDAGLGELIEFCE
KVPALRKRAEILKKERSEVTGETSLEKNGQEAGPATPTSTTSHMLTSERGETSATQEETSTAQGETSTAQ
AGTSTAQAGTSTAQAGTSTAQTKRKQITKSEGEKKKKLTQEQAQLSEPLGTDRKKDEDCLQTPLMAPPTP
PSSSSNKKQKNTTIPKHGIIKTRGPQEIHQLVEFSSSSNFPAVSELPTFEGLSAIPSSRLQSSQKPLEAH
LDLKMSPSSSRSPCHNLSVSLTSDSNVHLNSNAHSIQSSGAQVPYVPSATGFSNVRVPLMPSKTVSCSSI
APHMSLIKVPSSIQDLHLPTQEAFSSTEDPHNQAIASKNLQTTKMPPTTLTSKAQLLKMPSSATSSSSVQ
VSHTLATVSRSTSVKQILQTTRSSSIQILNSATVKASKNVQASQVSLPTEPNYFQASVAPPSATPSSSTS
LLVPLSKATSRAQSTQIHPERESICVQAHRAPSSTVSRNKCTTQLTQGAASGTGKAFSLPEVKASMKVQA
PQVSSPTASMSILNPNATPPTTSSNLLAPHATSSTTYSILLAPYATLSTASSNLLAPQATVSTASSNLLA
PHATLSTTSSNLLAPHATLSTTSSNLLAPHATSSTASSNLLAPQATLSTPSNSLLAPHATLSTTSSNLLA
PHATSSTASSNLLAPHATSSTASSNLLAPHATLPTASSNLLAPQLCPVTASRALSAIPVPSATVHSSPSW
TPRRGTVPKEPSREEGHHQGPKQVMVLKVTEPFTYDLEEDKRMFHATVATETEFFRVKVFDTALISKFIP
RNIIAISDYFGCNGFLEIYRASCVSDVNVNPTMVISNTLRQRANATPKISYLFSQAKGTFVSGEYLVIKK
TERNKAIYYGVKDNTGKMEVMVYGRLTNITCEPGNKLRLVCFELNLIEDGLQLKSVRHSYMQVINARR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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