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Report for CCDS56678.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56678.1 Public Mus musculus 10 Esr1 23 108 98 CCDS HistoryNCBI Gene:13982Re-query CCDS DB by CCDS ID:56678.1Re-query CCDS DB by GeneID:13982See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56678.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067086.13 ENSMUSP00000070070.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067086.13Link to Ensembl Protein Viewer:ENSMUSP00000070070.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000067086Re-query CCDS DB by Protein ID:ENSMUSP00000070070
Original member Current member EBI ENSMUST00000105589.1 ENSMUSP00000101214.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105589.1Link to Ensembl Protein Viewer:ENSMUSP00000101214.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105589Re-query CCDS DB by Protein ID:ENSMUSP00000101214
Original member Current member EBI ENSMUST00000105590.7 ENSMUSP00000101215.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105590.7Link to Ensembl Protein Viewer:ENSMUSP00000101215.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105590Re-query CCDS DB by Protein ID:ENSMUSP00000101215
Original member NCBI NM_001302531.1 NP_001289460.1 Updated not alive Link to Nucleotide Sequence:NM_001302531.1Link to Protein Sequence:NP_001289460.1Re-query CCDS DB by Nucleotide ID:NM_001302531Re-query CCDS DB by Protein ID:NP_001289460
Current member NCBI NM_001302531.2 NP_001289460.1 Accepted alive Link to Nucleotide Sequence:NM_001302531.2Link to Protein Sequence:NP_001289460.1Re-query CCDS DB by Nucleotide ID:NM_001302531Re-query CCDS DB by Protein ID:NP_001289460Link to BLAST:NP_001289460.1
Original member NCBI NM_001302532.1 NP_001289461.1 Updated not alive Link to Nucleotide Sequence:NM_001302532.1Link to Protein Sequence:NP_001289461.1Re-query CCDS DB by Nucleotide ID:NM_001302532Re-query CCDS DB by Protein ID:NP_001289461
Current member NCBI NM_001302532.2 NP_001289461.1 Accepted alive Link to Nucleotide Sequence:NM_001302532.2Link to Protein Sequence:NP_001289461.1Re-query CCDS DB by Nucleotide ID:NM_001302532Re-query CCDS DB by Protein ID:NP_001289461Link to BLAST:NP_001289461.1
Original member NCBI NM_007956.5 NP_031982.1 Updated not alive Link to Nucleotide Sequence:NM_007956.5Link to Protein Sequence:NP_031982.1Re-query CCDS DB by Nucleotide ID:NM_007956Re-query CCDS DB by Protein ID:NP_031982
Current member NCBI NM_007956.6 NP_031982.1 Accepted alive Link to Nucleotide Sequence:NM_007956.6Link to Protein Sequence:NP_031982.1Re-query CCDS DB by Nucleotide ID:NM_007956Re-query CCDS DB by Protein ID:NP_031982Link to BLAST:NP_031982.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001289460.1 599 P19785 599 100% 0 0
NP_001289461.1 599 P19785 599 100% 0 0
NP_031982.1 599 P19785 599 100% 0 0

Chromosomal Locations for CCDS 56678.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 4712384 4712847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 4746617 4746807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 4783857 4783973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 4856858 4857193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 4939212 4939350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 4969159 4969292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 4997830 4998013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 5001189 5001423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1800 nt):
ATGACCATGACCCTTCACACCAAAGCCTCGGGAATGGCCTTGCTGCACCAGATCCAAGGGAACGAGCTGG
AGCCCCTCAACCGCCCGCAGCTCAAGATGCCCATGGAGAGGGCCCTGGGCGAGGTATACGTGGACAACAG
CAAGCCCACTGTGTTCAACTACCCCGAGGGCGCCGCCTACGAGTTCAACGCCGCCGCCGCCGCCGCCGCC
GCCGCCTCGGCGCCGGTCTACGGCCAGTCGGGCATCGCCTACGGCCCCGGGTCGGAGGCGGCCGCCTTCA
GTGCCAACAGCCTGGGGGCTTTCCCCCAGCTCAACAGCGTGTCGCCTAGCCCGCTGATGCTGCTGCACCC
GCCGCCGCAGCTGTCTCCTTTCCTGCACCCGCACGGCCAGCAGGTGCCCTACTACCTGGAGAACGAGCCC
AGCGCCTACGCCGTGCGCGACACCGGCCCTCCCGCCTTCTACAGGTCTAATTCTGACAATCGACGCCAGA
ATGGCCGAGAGAGACTGTCCAGCAGTAACGAGAAAGGAAACATGATCATGGAGTCTGCCAAGGAGACTCG
CTACTGTGCCGTGTGCAATGACTATGCCTCTGGCTACCATTATGGGGTCTGGTCCTGCGAAGGCTGCAAG
GCTTTCTTTAAGAGAAGCATTCAAGGACACAATGACTACATGTGTCCAGCTACAAACCAATGCACCATTG
ACAAGAACCGGAGGAAGAGTTGCCAGGCCTGTCGGCTGCGCAAGTGTTACGAAGTGGGCATGATGAAAGG
CGGCATACGGAAAGACCGCCGAGGAGGGAGAATGTTGAAGCACAAGCGTCAGAGAGATGACTTGGAAGGC
CGAAATGAAATGGGTGCTTCAGGAGACATGAGGGCTGCCAACCTTTGGCCAAGCCCTCTTGTGATTAAGC
ACACTAAGAAGAATAGCCCTGCCTTGTCCTTGACAGCTGACCAGATGGTCAGTGCCTTGTTGGATGCTGA
ACCGCCCATGATCTATTCTGAATATGATCCTTCTAGACCCTTCAGTGAAGCCTCAATGATGGGCTTATTG
ACCAACCTAGCAGATAGGGAGCTGGTTCATATGATCAACTGGGCAAAGAGAGTGCCAGGCTTTGGGGACT
TGAATCTCCATGATCAGGTCCACCTTCTCGAGTGTGCCTGGCTGGAGATTCTGATGATTGGTCTCGTCTG
GCGCTCCATGGAACACCCGGGGAAGCTCCTGTTTGCTCCTAACTTGCTCCTGGACAGGAATCAAGGTAAA
TGTGTGGAAGGCATGGTGGAGATCTTTGACATGTTGCTGGCTACGTCAAGTCGGTTCCGCATGATGAACC
TGCAGGGAGAAGAGTTTGTGTGCCTCAAATCCATCATTTTGCTTAATTCCGGAGTGTACACGTTTCTGTC
CAGCACCTTGAAGTCTCTGGAAGAGAAGGACCACATCCACCGTGTCCTGGACAAGATCACAGACACTTTG
ATCCACCTGATGGCCAAAGCTGGCCTGACTCTGCAGCAGCAGCATCGCCGCCTAGCTCAGCTCCTTCTCA
TTCTTTCCCATATCCGGCACATGAGTAACAAAGGCATGGAGCATCTCTACAACATGAAATGCAAGAACGT
TGTGCCCCTCTATGACCTGCTCCTGGAGATGTTGGATGCCCACCGCCTTCATGCCCCAGCCAGTCGCATG
GGAGTGCCCCCAGAGGAGCCCAGCCAGACCCAGCTGGCCACCACCAGCTCCACTTCAGCACATTCCTTAC
AAACCTACTACATACCCCCGGAAGCAGAGGGCTTCCCCAACACGATCTGA

Translation (599 aa):
MTMTLHTKASGMALLHQIQGNELEPLNRPQLKMPMERALGEVYVDNSKPTVFNYPEGAAYEFNAAAAAAA
AASAPVYGQSGIAYGPGSEAAAFSANSLGAFPQLNSVSPSPLMLLHPPPQLSPFLHPHGQQVPYYLENEP
SAYAVRDTGPPAFYRSNSDNRRQNGRERLSSSNEKGNMIMESAKETRYCAVCNDYASGYHYGVWSCEGCK
AFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMKGGIRKDRRGGRMLKHKRQRDDLEG
RNEMGASGDMRAANLWPSPLVIKHTKKNSPALSLTADQMVSALLDAEPPMIYSEYDPSRPFSEASMMGLL
TNLADRELVHMINWAKRVPGFGDLNLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQGK
CVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITDTL
IHLMAKAGLTLQQQHRRLAQLLLILSHIRHMSNKGMEHLYNMKCKNVVPLYDLLLEMLDAHRLHAPASRM
GVPPEEPSQTQLATTSSTSAHSLQTYYIPPEAEGFPNTI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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