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Report for CCDS56863.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56863.1 Public Mus musculus 12 Dlk1 23 108 98 CCDS HistoryNCBI Gene:13386Re-query CCDS DB by CCDS ID:56863.1Re-query CCDS DB by GeneID:13386See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56863.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109842.8 ENSMUSP00000105468.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109842.8Link to Ensembl Protein Viewer:ENSMUSP00000105468.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109842Re-query CCDS DB by Protein ID:ENSMUSP00000105468
Original member NCBI NM_001190704.1 NP_001177633.1 Updated not alive Link to Nucleotide Sequence:NM_001190704.1Link to Protein Sequence:NP_001177633.1Re-query CCDS DB by Nucleotide ID:NM_001190704Re-query CCDS DB by Protein ID:NP_001177633
Current member NCBI NM_001190704.2 NP_001177633.1 Accepted alive Link to Nucleotide Sequence:NM_001190704.2Link to Protein Sequence:NP_001177633.1Re-query CCDS DB by Nucleotide ID:NM_001190704Re-query CCDS DB by Protein ID:NP_001177633Link to BLAST:NP_001177633.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177633.1 312 Q09163-3 312 99.359% 0 2

Chromosomal Locations for CCDS 56863.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 109453660 109453726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 109454985 109455048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 109455493 109455623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 109458074 109458215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 109459607 109459892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 109460112 109460360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGATCGCGACCGGAGCCCTCCTGCGCGTCCTCTTGCTCCTGCTGGCTTTCGGCCACAGCACCTATGGGG
CTGAATGCGACCCACCCTGTGACCCCCAGTATGGATTCTGCGAGGCTGACAATGTCTGCAGGTGCCATGT
TGGCTGGGAGGGTCCCCTCTGTGACAAGTGTGTAACTGCCCCTGGCTGTGTCAATGGAGTCTGCAAGGAA
CCATGGCAGTGCATCTGCAAGGATGGCTGGGACGGGAAATTCTGCGAAATAGACGTTCGGGCTTGCACCT
CAACCCCCTGCGCCAACAATGGAACTTGCGTGGACCTGGAGAAAGGCCAGTACGAATGCTCCTGCACACC
TGGGTTCTCTGGAAAGGACTGCCAGCACAAGGCTGGGCCCTGCGTGATCAATGGTTCTCCCTGCCAGCAC
GGAGGCGCCTGCGTGGATGATGAGGGCCAGGCCTCGCATGCTTCCTGCCTGTGCCCCCCTGGCTTCTCAG
GCAACTTCTGTGAGATCGTAGCCGCAACCAACAGCTGTACCCCTAACCCATGCGAGAACGATGGCGTCTG
CACCGACATCGGGGGTGACTTCCGTTGCCGCTGCCCAGCTGGATTCGTCGACAAGACCTGCAGCCGCCCG
GTGAGCAACTGCGCCAGTGGCCCGTGCCAGAACGGGGGCACCTGCCTCCAGCACACCCAGGGACAGGCCA
TCTGCTTCACCATCCTGGGCGTGCTCACCAGCCTGGTGGTGCTGGGCACCGTGGCCATCGTCTTTCTCAA
CAAGTGCGAAACCTGGGTGTCCAACCTGCGCTACAACCACATGCTTCGCAAGAAGAAGAACCTCCTGTTG
CAGTATAACAGCGGCGAGGAGCTGGCGGTCAATATCATCTTCCCCGAGAAGATTGACATGACCACTTTCA
ACAAGGAGGCTGGTGATGAGGAGATCTAA

Translation (312 aa):
MIATGALLRVLLLLLAFGHSTYGAECDPPCDPQYGFCEADNVCRCHVGWEGPLCDKCVTAPGCVNGVCKE
PWQCICKDGWDGKFCEIDVRACTSTPCANNGTCVDLEKGQYECSCTPGFSGKDCQHKAGPCVINGSPCQH
GGACVDDEGQASHASCLCPPGFSGNFCEIVAATNSCTPNPCENDGVCTDIGGDFRCRCPAGFVDKTCSRP
VSNCASGPCQNGGTCLQHTQGQAICFTILGVLTSLVVLGTVAIVFLNKCETWVSNLRYNHMLRKKKNLLL
QYNSGEELAVNIIFPEKIDMTTFNKEAGDEEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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