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Report for CCDS56966.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56966.1 Public Mus musculus 14 Nuggc 23 108 98 CCDS HistoryNCBI Gene:100503545Re-query CCDS DB by CCDS ID:56966.1Re-query CCDS DB by GeneID:100503545See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 56966.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079469.6 ENSMUSP00000078434.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079469.6Link to Ensembl Protein Viewer:ENSMUSP00000078434.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000079469Re-query CCDS DB by Protein ID:ENSMUSP00000078434
Original member Current member NCBI NM_001195674.2 NP_001182603.2 Accepted alive Link to Nucleotide Sequence:NM_001195674.2Link to Protein Sequence:NP_001182603.2Re-query CCDS DB by Nucleotide ID:NM_001195674Re-query CCDS DB by Protein ID:NP_001182603Link to BLAST:NP_001182603.2

Chromosomal Locations for CCDS 56966.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 65605267 65605296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65606703 65606763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65608139 65608243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65608790 65608898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65609811 65610033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65611132 65611362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65613394 65613603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65617592 65617767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65619073 65619091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65619568 65619657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65623161 65623266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65624019 65624152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65635003 65635167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65638551 65638708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65639983 65640121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65641239 65641347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65641858 65641994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65645010 65645100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65648171 65648316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2439 nt):
ATGGATTTGGACTCTATGAAATCCAAGGAGGAGCTCGGAGTAGCACCTCTTGGGACCGGCTATTCCAGTT
CATTCCAAGGCGTTTCCCCTGCTGACTGCGATCTGTTTAAAGAACCTGTTAGGAAAAGACGCAGGTTGCA
TCGAGACCGGCAATTCCAGGCCTTTCCTTCTGCAGAGCAAAGTGCTCTTAAGGAATATGAAAAACTGGAG
TGTCGGACCAGGAGGGTCTTGAGCAACACTTATCAGAAATTGATTCAGTCTGTCTTCCTGGATGACAGCA
TTCCCAGCGGACTCAAGTATCTCATAAACCGGCTTCTTGCCTTGATTGAAAAATCCCCACTGGAGCCAGT
CTATGTGGGGTTCTTGGGAATCACTGGAGCTGGCAAGAGCTCTCTGATCAATGCCCTCATCCGGCAAGCA
ATGTTTCTGCCTGTGTCTGGAGAAAGTGTTTGCACATCATGCATCGTACAAGTGAGCTCTGGCTGCTGTG
AGCAGTATGAGGCCAAAATTCACCTTCTGTCCGATCAGGAGTGGAAGGCAGAACTGAAGGACTTGACTAA
GCTCCTGCACAGAGCAGAGCAGTCTGGGGAAGAGGAGGCAGACTTGTGGGACAGGGATGATGCAACGGAA
GAAGCTGCCCAGAAGCTACGGATGCTCTATGGCCATGGGGCAGAAAGGAGGCACTACGAGGAGTTGCTAA
GGCTGAAGCCCAGAGGGAGGATTCCCAACTCGAGAACCATCACTCTAAAGGCAGAGGAGGCAGGAGAGCT
ATCTGTCAAACTGGACCCCTACATCAGGACCAGGAGGAGAGACTGGGATGGAGAATCAGCAGAGACACAA
ATCTGGCCCTTGATCAAATATGTGGAAGTGATTCTTCCCAAATCTGCACTGATCCCAGAAGGGGTTGTCC
TGGTAGACATTCCAGGCACAGGAGACTTCAACAGCAAGAGGGATAAAATGTGGAAAAAGACCATTGACAA
GTGTTCCGTGATCTGGGTGATCAGCGACATCGAGCGAGTTTCTGGAGGAAAGACCCATGAAGACCTTCTG
AGCGAGAGCATCAAAGCCTGCCAGCGTGGCTTCTGCAGGGACATCGCCCTGGTGGTCACCAAAACAGACA
AACTCCACTTGCAGGAATATCTCAGGGAAAGAAAGATGGGAAATCAAGCTATTCAGAGTCAGAGAGAAGC
TGTTCTGCAAAGAAATGAAATAATCAAACTACAAAGGAAGAGAATGCTCAAGGAGAAATTGAAGAGAAAA
CTGCCAGCTGACTCCAAGGTTCTGGAAGCCTCAGATCTGGTGTACACGGTCAGTGCCCATGAGTACTGGC
AGCGGACCATCCTGACTGAGGAAGAAAGTGAGATCCCCAAGTTAAGAGAATATATTAGGAAAAGGATCTT
GGACAAGAAGAGGAGGCTGGTGACCAAGTACGTCACAGAAGCCTTTGGCCTATTGCTTCTCACAGACACG
TTAAACACGGAGGAAAGCCTGCTGACTGAAGAACTGAACACGGGTGGCCTGCGACAATTTGTAGAGGAGA
AGATGGAGCTGTTGGAGAAGGCCATCGAGCAGTGCTTTGCTCGAATGGAACAGCCCCTGCAGACAGGGGT
CCAGGTGGCCATGACTTCCTACCGCCGCATCCTCGGGTCATGCCTGGTGAGGAGCAGAGGAAACCAAGGT
TTTCACCAGACCCTGAAAGCAGTTTGCCTGAAAAATGGGGTCTATGCCTCCAGAACTCTGGCCAGAATTG
ACCTGAATGAAGCCCTGTCTCAGCCTATCTATGACCAGATTGACCCTGTATTTGGAGGCATTTTTAGGGA
TGGGAAGCCCACTGCCCCTGCTCTGATGCAGCACATAGATGCTTTCAAGCATTCCCTGGAGGAGAGGATG
GCAGAAGTTGGGGTTAGAAGTGGCTGGAAACAAGATGGATACAAGAGAAGCTTCCTGATCCAGGAGATAA
GCGCCATCCTGGGAGGCCTGGAGAGCCACATCCTCCGGAGGAAAAGGAAGATCTATAAGTCTGTCACCAG
CTCCATCCAAAACGACCTGAAGCCCTGCTATGAAGAGGCAGCTCAGATCACTGGCAAGAAAGCATGCGAG
AGAATGAAGGATGTCATCAGGAGAGGGGTGGAGCGGCAGGTGGCTGAGGGCTTGTTTGAGAGGGCTCAAG
AGAGGATGTGGCACCAGTTTCGACAGCTGAAGCATGGAATCACTGAGAAGGTCAAGGGCAGCATCACTAC
CATGTTAACCCTTGCTGCACCCCAGGGAGTTGGACTCTGCAAGGAGCTTGCAGATGTCCGGAATGAACAG
AAGGAAATGGAAAAACTCTACAGAAGCCTGAGGGAGGTTGCTGAGAACGCACAGCTGCGGAGGAGCATGC
AAGATTTCCTCCTGCGAATGTCCCCCAGCAAAGCCGGCCCCCATGGAACAAAACTTTAG

Translation (812 aa):
MDLDSMKSKEELGVAPLGTGYSSSFQGVSPADCDLFKEPVRKRRRLHRDRQFQAFPSAEQSALKEYEKLE
CRTRRVLSNTYQKLIQSVFLDDSIPSGLKYLINRLLALIEKSPLEPVYVGFLGITGAGKSSLINALIRQA
MFLPVSGESVCTSCIVQVSSGCCEQYEAKIHLLSDQEWKAELKDLTKLLHRAEQSGEEEADLWDRDDATE
EAAQKLRMLYGHGAERRHYEELLRLKPRGRIPNSRTITLKAEEAGELSVKLDPYIRTRRRDWDGESAETQ
IWPLIKYVEVILPKSALIPEGVVLVDIPGTGDFNSKRDKMWKKTIDKCSVIWVISDIERVSGGKTHEDLL
SESIKACQRGFCRDIALVVTKTDKLHLQEYLRERKMGNQAIQSQREAVLQRNEIIKLQRKRMLKEKLKRK
LPADSKVLEASDLVYTVSAHEYWQRTILTEEESEIPKLREYIRKRILDKKRRLVTKYVTEAFGLLLLTDT
LNTEESLLTEELNTGGLRQFVEEKMELLEKAIEQCFARMEQPLQTGVQVAMTSYRRILGSCLVRSRGNQG
FHQTLKAVCLKNGVYASRTLARIDLNEALSQPIYDQIDPVFGGIFRDGKPTAPALMQHIDAFKHSLEERM
AEVGVRSGWKQDGYKRSFLIQEISAILGGLESHILRRKRKIYKSVTSSIQNDLKPCYEEAAQITGKKACE
RMKDVIRRGVERQVAEGLFERAQERMWHQFRQLKHGITEKVKGSITTMLTLAAPQGVGLCKELADVRNEQ
KEMEKLYRSLREVAENAQLRRSMQDFLLRMSPSKAGPHGTKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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