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Report for CCDS57006.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57006.1 Public Mus musculus 15 Hdac7 23 108 98 CCDS HistoryNCBI Gene:56233Re-query CCDS DB by CCDS ID:57006.1Re-query CCDS DB by GeneID:56233See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57006.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000116409.8 ENSMUSP00000112110.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116409.8Link to Ensembl Protein Viewer:ENSMUSP00000112110.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000116409Re-query CCDS DB by Protein ID:ENSMUSP00000112110
Original member Current member NCBI NM_001204275.1 NP_001191204.1 Accepted alive Link to Nucleotide Sequence:NM_001204275.1Link to Protein Sequence:NP_001191204.1Re-query CCDS DB by Nucleotide ID:NM_001204275Re-query CCDS DB by Protein ID:NP_001191204Link to BLAST:NP_001191204.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001191204.1 953 Q8C2B3-3 953 100% 0 0

Chromosomal Locations for CCDS 57006.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 97793697 97793742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97793930 97794065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97795747 97795831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97796098 97796231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97796833 97796951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97797941 97798038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97798224 97798343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97799557 97799644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97799761 97799816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97800695 97800802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97802076 97802125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97802430 97802550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97802683 97802816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97806466 97806667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97807594 97807788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97807965 97808161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97808353 97808533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97808660 97808770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97808967 97809058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97809401 97809526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97809924 97810039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97810853 97810964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97811263 97811353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 97811438 97811581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2862 nt):
ATGGACCTGCGGGTGGGCCAGCGGCCCACGGTGGAGCCCCCACCAGAGCCTGCGCTGCTGACCCTGCAAC
ACCCCCAACGCCTGCACCGCCATCTCTTCCTGGCAGGCTTACACCAGCAACAGCGCTCAGCCGAGCCCAT
GAGGCTCTCCATGGACCCACCAATGCCGGAGCTGCAGGGGGGACAGCAGGAGCAAGAACTTCGGCAACTT
CTCAATAAAGACAAGAGCAAGCGAAGTGCCGTAGCCAGCAGTGTGGTCAAGCAGAAGCTGGCTGAAGTGA
TCCTGAAGAAACAGCAGGCAGCCCTTGAGAGAACAGTCCATCCCAGCAGCCCCAGTATTCCCTACAGAAC
TCTTGAGCCCTTGGACACAGAGGGTGCTGCCCGCTCCGTGCTTAGCAGCTTCCTGCCTCCTGTTCCCAGC
CTGCCCACTGAACCCCCGGAACACTTTCCCTTGCGTAAAACAGTGTCTGAACCCAACCTGAAGTTGCGCT
ACAAACCCAAGAAATCCCTGGAGAGACGCAAGAATCCCCTGCTCAGGAAGGAGAGTGCCCCGCCCAGCCT
TCGGAGGAGGCCTGCCGAGACCCTTGGAGATTCCTCCCCCAGTAGTAGCAGCACACCCGCGTCAGGGTGC
AGCTCCCCTAATGACAGCGAGCATGGCCCTAACCCTGCCCTAGGCTCAGAGGCGCTCTTGGGCCAGCGGC
TGCGGCTGCAGGAGACTTCTCTGGCCCCGTTCGCTTTGCCGACAGTGTCCTTGCTGCCCGCAATCACACT
GGGGCTGCCTGCCCCTGCCAGGGCTGATGGTGACCGCAGGACCCATTCAACTTTAGGCCCTCGGGGTCCT
GTACTGGGGAACCCCCATGCTCCCCTCTTCCTGCACCACGGTCTGGAGCCAGAGGCTGGGGGCACCTTAC
CCTCTCGCCTGCAACCCATTCTCCTGCTGGACCCCTCAGTCTCTCATGCCCCACTGTGGACTGTGCCTGG
CCTTGGGCCCTTGCCCTTCCACTTTGCCCAGCCCTTACTGACCACCGAGCGGCTCTCTGGGTCAGGCCTC
CATCGACCACTTAACCGGACCCGCTCAGAGCCCCTGCCCCCCAGCGCCACAGCCTCCCCTCTGCTGGCCC
CCCTGCAGCCCCGCCAGGATCGGCTCAAACCTCACGTCCAGCTGATCAAGCCAGCCATCTCCCCTCCCCA
GAGGCCTGCCAAGCCCAGTGAGAAGCCCCGACTGCGACAGATACCCTCGGCTGAGGACCTAGAGACAGAT
GGTGGGGGAGTGGGACCTATGGCGAATGATGGCCTGGAACATAGGGAGTCAGGCCGTGGGCCTCCTGAGG
GCAGAGGCTCCATTTCTCTGCAGCAGCATCAACAGGTGCCACCCTGGGAGCAGCAGCATCTAGCCGGGCG
GCTCTCTCAGGGAAGCCCCGGGGACTCCGTGCTGATACCTCTGGCCCAGGTTGGACACCGGCCCCTGTCC
AGAACCCAGTCTTCCCCAGCAGCACCTGTCTCCCTGCTGAGCCCAGAGCCCACCTGTCAGACCCAAGTCC
TCAACAGCTCAGAGACACCTGCTACAGGGCTGGTCTATGACTCGGTGATGCTGAAACACCAATGTTCCTG
TGGAGACAACAGCAAGCATCCCGAGCATGCAGGCCGCATCCAGAGCATCTGGTCCCGGCTGCAGGAACGG
GGTCTCCGCAGCCAGTGTGAGTGTCTCCGAGGCCGAAAGGCTTCCCTAGAGGAGCTGCAGTCAGTCCACT
CTGAACGGCACGTGCTCCTCTACGGCACGAACCCACTCAGCCGCCTCAAACTGGATAACGGGAAGCTTAC
AGGACTCCTGGCACAGCGGACGTTTGTGATGCTACCCTGTGGCGGGGTTGGGGTCGATACTGACACCATC
TGGAACGAGCTGCATTCCTCCAATGCAGCCCGCTGGGCTGCGGGCAGTGTCACCGACCTTGCCTTCAAAG
TAGCTTCCCGAGAGCTGAAGAATGGCTTTGCTGTGGTGCGACCCCCGGGACACCATGCAGATCATTCTAC
AGCCATGGGCTTCTGCTTCTTCAACTCCGTGGCCATCGCCTGCCGACAGCTACAGCAACACGGCAAAGCC
AGCAAGATCCTCATTGTTGACTGGGATGTTCACCATGGCAACGGCACACAGCAGACTTTCTACCAGGACC
CCAGTGTGCTCTACATTTCCCTTCATCGCCATGACGACGGCAACTTCTTCCCAGGCAGTGGGGCCGTGGA
TGAGGTGGGAACTGGCAGTGGCGAGGGCTTCAATGTCAACGTGGCTTGGGCTGGGGGCTTGGATCCACCC
ATGGGGGATCCTGAGTACCTGGCTGCTTTCAGGATAGTGGTGATGCCCATTGCCCGAGAGTTTGCTCCAG
ACCTGGTCCTGGTGTCTGCTGGGTTTGATGCTGCGGAGGGTCACCCAGCCCCGCTGGGTGGCTACCATGT
TTCTGCCAAATGTTTTGGGTACATGACGCAGCAGTTGATGAACTTGGCAGGAGGCGCCGTGGTGTTGGCC
TTAGAGGGTGGACATGACCTCACGGCCATCTGTGATGCCTCGGAGGCCTGTGTAGCTGCTCTTCTGGGCA
ACAAGGTGGACCCCCTTTCAGAAGAAAGCTGGAAACAGAAACCCAACCTCAGTGCCATCCGCTCGCTGGA
AGCTGTGGTCAGGGTGCACAGGAAATACTGGGGCTGCATGCAGCGCTTGGCCTCCTGTCCAGACTCCTGG
CTACCCAGAGTGCCGGGAGCTGATGCAGAAGTGGAAGCCGTGACCGCGCTGGCATCCCTTTCTGTGGGCA
TCCTGGCTGAAGACAGGCCCTCGGAGCGGCTGGTGGAAGAGGAAGAACCCATGAACCTCTAG

Translation (953 aa):
MDLRVGQRPTVEPPPEPALLTLQHPQRLHRHLFLAGLHQQQRSAEPMRLSMDPPMPELQGGQQEQELRQL
LNKDKSKRSAVASSVVKQKLAEVILKKQQAALERTVHPSSPSIPYRTLEPLDTEGAARSVLSSFLPPVPS
LPTEPPEHFPLRKTVSEPNLKLRYKPKKSLERRKNPLLRKESAPPSLRRRPAETLGDSSPSSSSTPASGC
SSPNDSEHGPNPALGSEALLGQRLRLQETSLAPFALPTVSLLPAITLGLPAPARADGDRRTHSTLGPRGP
VLGNPHAPLFLHHGLEPEAGGTLPSRLQPILLLDPSVSHAPLWTVPGLGPLPFHFAQPLLTTERLSGSGL
HRPLNRTRSEPLPPSATASPLLAPLQPRQDRLKPHVQLIKPAISPPQRPAKPSEKPRLRQIPSAEDLETD
GGGVGPMANDGLEHRESGRGPPEGRGSISLQQHQQVPPWEQQHLAGRLSQGSPGDSVLIPLAQVGHRPLS
RTQSSPAAPVSLLSPEPTCQTQVLNSSETPATGLVYDSVMLKHQCSCGDNSKHPEHAGRIQSIWSRLQER
GLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPLSRLKLDNGKLTGLLAQRTFVMLPCGGVGVDTDTI
WNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQHGKA
SKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVGTGSGEGFNVNVAWAGGLDPP
MGDPEYLAAFRIVVMPIAREFAPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNLAGGAVVLA
LEGGHDLTAICDASEACVAALLGNKVDPLSEESWKQKPNLSAIRSLEAVVRVHRKYWGCMQRLASCPDSW
LPRVPGADAEVEAVTALASLSVGILAEDRPSERLVEEEEPMNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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