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Report for CCDS57415.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57415.1 Public Mus musculus 6 Kcp 23 108 98 CCDS HistoryNCBI Gene:333088Re-query CCDS DB by CCDS ID:57415.1Re-query CCDS DB by GeneID:333088See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57415.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101614.9 ENSMUSP00000099135.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101614.9Link to Ensembl Protein Viewer:ENSMUSP00000099135.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000101614Re-query CCDS DB by Protein ID:ENSMUSP00000099135
Original member Current member NCBI NM_001029985.4 NP_001025156.3 Accepted alive Link to Nucleotide Sequence:NM_001029985.4Link to Protein Sequence:NP_001025156.3Re-query CCDS DB by Nucleotide ID:NM_001029985Re-query CCDS DB by Protein ID:NP_001025156Link to BLAST:NP_001025156.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001025156.3 1550 Q3U492-1 1550 100% 0 0

Chromosomal Locations for CCDS 57415.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 29482245 29482462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29482634 29482940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29483930 29484094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29484615 29484716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29484811 29484922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29485003 29485175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29485418 29485560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29487181 29487280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29487497 29487576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29489033 29489153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29490066 29490148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29490395 29490568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29491665 29491758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29491845 29491927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29492055 29492145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29492385 29492470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29493189 29493365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29495758 29495928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29496161 29496349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29496431 29496524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29496620 29496702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29496802 29496975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29497553 29497646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29497722 29497828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29497905 29498057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29498277 29498358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29498429 29498514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29498787 29498880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29498957 29499036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29499125 29499218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29501202 29501290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29502290 29502383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29502585 29502667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29502778 29502874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29504233 29504309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29504399 29504567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29505638 29505801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29507857 29507926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4653 nt):
ATGGCGGGGGCTCGGGCGGCGTTGCTACCACTGCTCCTGCACCTCGGGAGCCTGGCGCTGGCCGCGCGGG
GTGGAGAGGTCTCCAGAGAGCAGCCTAGGCTTGCTGATGCTATCTCTCAGCAGCAGGCACCCTCCCACTC
CTTGGTCCCTGGTGAGACCCACCAACAGCAGTGGTGCCCCCTGGAGGAGAGGCTGGAACGGCTGGAGGCA
GAGGTGACTGACCTCAGAAAGCAGAACAGGGAGCTGCAAGCCAGGGTGGTGCAGCTGGAGTCCTGTGAGT
GCTGGGGGCCAGGTCACACCTGTCCCGAAGGAGCTCGCTGGGAGCCTGATGCCTGCACAGCCTGCGTGTG
CCGTGATGGAACGGCGCACTGTGGCCCCCAGCCCAACCTGCCCCACTGCCGTGGCTGCAGCCACAATGGG
CAGTCTTATGGTCATGGGGAGACCTTCTCCCCAGATGCCTGTACCACCTGCCGCTGTCTGGCAGGAACCG
TGCAGTGCCAGGGGCCTTCATGCTCTGAGCTTAACTGTCTGGAGAGCTTCATCCCTCCTGGAGAATGTTG
CCCCATCTGCCGGCCAGGCTGTGAATATGAAGGGCAGCTTCACCAGGAAGGGTCTAGTTTCTTGTCCAGT
TCCAACCCATGCCTCCAGTGCTCTTGCCTGAGGAGCCTGGTTCGATGTGTGCCTGTGAAGTGCCAGCCAA
GCCCCTGCCTCAATCCAGTCCCGAGGCTTGGACACTGCTGCCCAGTCTGCCAAGCCTCAGGCTGCACAGA
AGGGAACTCTCATAGGGACCATGGCCAAGAGTGGACCACTCCTGGAGACCCCTGCCGCATCTGCCAGTGC
CTGGAGGGCCACATCCAGTGCCGCCAGCGGGAGTGTGCCAGCCTGTGTCCATACCCTGCCAGGCCCCTTC
CGGGCACCTGTTGCCCGGTGTGTGACGGCTGTTTCCTAAATGGGCGGGAGCACAGCAGTGGGGAGCCCGT
GGGCTCCCAGGACCCCTGCTCTAGCTGCCGCTGTACCAATGGGAGTGTCCAGTGTGAGCCTCTGCCCTGC
CCGCCTGCACCCTGCAGATACCCGGGCAGGATCCCTGGGCAGTGCTGCCCTGTCTGTGATGGCTGTAAAT
ACCAGGGACATGAATATCGGAGCCAGGAGACCTTCACCCTCCAAGAGAATGGCCGCTGCCTTCGGTGCGT
CTGCCAGGCTGGTGAAGTATCCTGTGAAGAACAGGACTGCCCAGTCACTCCCTGTGTCCGCTCTGCCTCC
GGCCCCCAGCTCTGCTCCGCCTGTGTGCTCAATGGTGAGGAGTTTGCTGAGGGGATCCAGTGGGAGCCAG
ATGACCAGCCCTGTACTTCCTGTTCCTGCCAAGATGGAGTGCCTGTGTGCAGGGCTGTGCTTTGCTCTCC
AGTACCCTGCCAACATCCTACCCAGCCACCTGGTGCCTGCTGTCCCAGCTGTGATAGCTGCACCTACCAC
AGCCTGGTGTATGCTAATGGGCAGAACTTCACAGATGTGGACAGCCCTTGTCAGACCTGCTACTGCGAGG
ATGGGACTGTGAGGTGTTCATTGATCAACTGTCCTTTCACAACCTGTGCCAAGCCCCAGAATGGACCAGG
CCAGTGCTGCCCTAAGTGCCCAGACTGCATCTTGGAGGCACAGGTGTTTGTAGATGGGGAGCGCTTCCCT
CATCCAAGAGACCCCTGCCAGGAGTGCTGGTGTCAGGAAGGCCAAGCTCACTGCCAGCTCCGTGCCTGCC
CCAGCGCCCCCTGTGTTCACCCTCTGCCAGGCACCTGCTGCAAGAATGACTGCACAGGCTGTGCCTTTGG
CGGGAAAGAGTACCCCAATGGAGCGGACTTCCCACATCCCACTGATCCGTGTCGCCTGTGTCGCTGTCTG
AGCGGCAACGTACAGTGCCTGGCGCGTCGCTGTCCGCCACTGTCCTGTCCGCAGCCAGTCCTCACTCCGG
GAGACTGCTGCCCGCAGTGCCCAGATGCCCCTGCTGACTGCCCACAGTCAGGGAATATGGTCCCTGTCCG
CCACCAGGAGCACTTTTTCCAACCGGGAGACCCTTGCAGCCGCTGCCTCTGCCTGGATGGCTCAGTGTCC
TGCCAGCGGCTGACCTGCCCTCCTGCGCCCTGCGCCCACCCACGCCGGGACGCCTGTTGCCCCTCTTGCG
ACGGCTGCCTGTATCAGGGGAAGGAGTTTGCCAGTGGGGAGCGTTTTCCATCACCAAACGTTGCGTGCCA
CGTGTGCCTCTGCTGGGAGGGCAGCGTCAAGTGCGAGCCCAGGACTTGTGCCCCTGCACAGTGCCCCTTT
CCCACCAGGGAAGACTGCTGCCCTGCCTGTGATAGCTGTGATTATCTTGGGGTCTCCTATCTGAGCAGCC
AGGAGTTCCCAGACCCCCGGGAAGCCTGCAACCTATGCACCTGCCTTGGAGGCTTCGTGACTTGCACCCG
CCGGCCCTGTGAGCCTCCAGCCTGCAGCCATCCACTCATCGTACCCGAGCACTGCTGTCCAACCTGCCAG
GGATGCCTGTACCATGGGATCACTGCTGCCCTTGGAGAGACCCTTCCTGACCCCCTTGACCCCACCTGCT
CCCTCTGCACCTGTGAGGAAGGTTCTATGCGCTGCCAAAAGAAGCCATGCCCTCCGGCTCCCTGCGCTCA
CCCGTCTCCAGGCCCCTGCTTCTGCCCTGTTTGTCGCAGCTGCCTCTCTCAGGGCCGGGAGCACCAAGAT
GGGGAGGAGTTTGAGGGACCCGAGGGCAGCTGTGAGCGCTGCCGCTGTCTGGCCGGCCAGGTCAGCTGCA
CGAGGCTTCAGTGCCCGTCCCTGCCCTGCTTGCACCAGGTCACAGAACCAGGGACCTGCTGTCCTCGATG
CACAGGCTGCCTCGCTCGTGGGGAGGAGCATCCTGAAGGGAGTAGCTGGGTGCCAGCGGACAGCCCCTGT
TCCTCCTGCATGTGTCACAAGGGCATCATCACTTGTGCCCAAGTCCAGTGTGTCAGCGCCTGCATCTGGC
CCCAGGAGGGGCCCAGCGACTGCTGTCCTCAGTGCTCTGGCTGTGAGCATGGGGGCAGGAAGTATGAGCC
TGGGGAGAGCTTCCAGCCTGGGGCAGACCCGTGTGAAGTGTGCATCTGCAAGCAGAAGCGTGAGGGGCCT
CCCAGCCTTCACTGTAGTCGGCGGCAGTGCCCCAGCCTGGTGGGCTGCCCACCAAGCCAGCTTCTTCCTC
CTGGCCCCCAGCACTGCTGTCCCACCTGTGCCCAGGCACTGAGTAACTGCACAGAGGACCTGGTGGGGTC
TGAGCTGGTGCCACCAGACCCCTGCTACACCTGTCAGTGTCAGGATCTGACGTGGCTCTGTACTCACCGG
GCCTGTCCTGAGCTCAGCTGTCCCCTGTGGGAGCGTCACACAACCCCTGGCAGCTGCTGCCCCGTGTGTA
AAGACCCTACCCAGTCATGCATGCATCAGGGTCGCTGGGTGGCCTCTGGAGAACAGTGGGCAGTGGATGC
CTGCACCAGCTGCTCCTGTGTGGCTGGTACTGTGCACTGCCAGACCCAGCGCTGCAGGAAGCTCGCATGT
AGCCGGGATGAGGTCCCTGCCCTGAGTCCCGGCAGCTGCTGTCTCCGCTGTTTGCCCCGGCCGGCTTCCT
GCATGGCCTTCGGAGACCCCCATTACCGCACCTTCGATGGCCGCCTGTTGCACTTCCAAGGCAGCTGCAG
CTACGTGCTGGCCAAGGACTGCCACGGCGAGGACTTCAGTGTGCACGTGACTAATGATGACCGGGGCCGG
AGGGGTGTGGCCTGGACCCAAGAGGTAGCAGTGCTGTTGGGAACCGTGGCTGTGAGGCTGCTGCAGGGCA
GGACAGTCATGGTGGACCAGCACACAGTGACCTTGCCCTTCCTCCGGGAGCCACTGCTGTACATTGAGCT
TCGTGGTCACACTGTGATCCTGCATGCCCAGCCTGGGCTTCAGGTGCTGTGGGACGGGCAATCCCAGGTG
GAGGTGAGAGTTCCCAGCTCCTACCGGGGCCAGACTTGTGGTCTCTGTGGGAACTTCAATGGCTTTGCCC
AGGATGATCTGCAGGGTCCGGATGGGAGGCTCCTGCCCACAGAGGCTTCGTTTGGGAACAGCTGGAAGGT
CCCCAAGGGGCTGGGGCCTGGCCGGCCGTGTTCTGCAGGCCGAGAGGTGGACCCGTGCCGGGCAGCAGGC
TACCGTGCCAGGCGTGAGGCCAATGCCCGGTGCGGGATCCTGAAGACTTCACCGTTCAGTCATTGCCATG
CTGTGGTGCCCCCGGAACCCTTCTTTGCTGCCTGTGTGTACGACTTGTGTGCTTGTGGTCCAGGCTCCTC
CTCTGACACCTGTCTCTGTGATGCCCTTGAAGCCTACGCTAGCCACTGTCGCCAGGCAGGGGTGACTCCT
GTCTGGAGGGGTCCTACACTCTGTGTGGTGGGCTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTG
GACCACCTTGTCCCCGTACCTGTTTCAACCGGCACATACCCCTAGGGGAACTGGCAGCCCACTGTGTGAG
ACCCTGTGTTCCAGGCTGCCAGTGTCCTGCAGGCCTGGTGGAACATGAAGGCCATTGCATCTCACCTGAG
GTCTGCCCACCAGTCCTGCTTACTGGCGACTAG

Translation (1550 aa):
MAGARAALLPLLLHLGSLALAARGGEVSREQPRLADAISQQQAPSHSLVPGETHQQQWCPLEERLERLEA
EVTDLRKQNRELQARVVQLESCECWGPGHTCPEGARWEPDACTACVCRDGTAHCGPQPNLPHCRGCSHNG
QSYGHGETFSPDACTTCRCLAGTVQCQGPSCSELNCLESFIPPGECCPICRPGCEYEGQLHQEGSSFLSS
SNPCLQCSCLRSLVRCVPVKCQPSPCLNPVPRLGHCCPVCQASGCTEGNSHRDHGQEWTTPGDPCRICQC
LEGHIQCRQRECASLCPYPARPLPGTCCPVCDGCFLNGREHSSGEPVGSQDPCSSCRCTNGSVQCEPLPC
PPAPCRYPGRIPGQCCPVCDGCKYQGHEYRSQETFTLQENGRCLRCVCQAGEVSCEEQDCPVTPCVRSAS
GPQLCSACVLNGEEFAEGIQWEPDDQPCTSCSCQDGVPVCRAVLCSPVPCQHPTQPPGACCPSCDSCTYH
SLVYANGQNFTDVDSPCQTCYCEDGTVRCSLINCPFTTCAKPQNGPGQCCPKCPDCILEAQVFVDGERFP
HPRDPCQECWCQEGQAHCQLRACPSAPCVHPLPGTCCKNDCTGCAFGGKEYPNGADFPHPTDPCRLCRCL
SGNVQCLARRCPPLSCPQPVLTPGDCCPQCPDAPADCPQSGNMVPVRHQEHFFQPGDPCSRCLCLDGSVS
CQRLTCPPAPCAHPRRDACCPSCDGCLYQGKEFASGERFPSPNVACHVCLCWEGSVKCEPRTCAPAQCPF
PTREDCCPACDSCDYLGVSYLSSQEFPDPREACNLCTCLGGFVTCTRRPCEPPACSHPLIVPEHCCPTCQ
GCLYHGITAALGETLPDPLDPTCSLCTCEEGSMRCQKKPCPPAPCAHPSPGPCFCPVCRSCLSQGREHQD
GEEFEGPEGSCERCRCLAGQVSCTRLQCPSLPCLHQVTEPGTCCPRCTGCLARGEEHPEGSSWVPADSPC
SSCMCHKGIITCAQVQCVSACIWPQEGPSDCCPQCSGCEHGGRKYEPGESFQPGADPCEVCICKQKREGP
PSLHCSRRQCPSLVGCPPSQLLPPGPQHCCPTCAQALSNCTEDLVGSELVPPDPCYTCQCQDLTWLCTHR
ACPELSCPLWERHTTPGSCCPVCKDPTQSCMHQGRWVASGEQWAVDACTSCSCVAGTVHCQTQRCRKLAC
SRDEVPALSPGSCCLRCLPRPASCMAFGDPHYRTFDGRLLHFQGSCSYVLAKDCHGEDFSVHVTNDDRGR
RGVAWTQEVAVLLGTVAVRLLQGRTVMVDQHTVTLPFLREPLLYIELRGHTVILHAQPGLQVLWDGQSQV
EVRVPSSYRGQTCGLCGNFNGFAQDDLQGPDGRLLPTEASFGNSWKVPKGLGPGRPCSAGREVDPCRAAG
YRARREANARCGILKTSPFSHCHAVVPPEPFFAACVYDLCACGPGSSSDTCLCDALEAYASHCRQAGVTP
VWRGPTLCVVGCPVDRGFVFDECGPPCPRTCFNRHIPLGELAAHCVRPCVPGCQCPAGLVEHEGHCISPE
VCPPVLLTGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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