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Report for CCDS57640.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57640.1 Public Mus musculus 8 Hsf4 23 108 98 CCDS HistoryNCBI Gene:26386Re-query CCDS DB by CCDS ID:57640.1Re-query CCDS DB by GeneID:26386See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 57640.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163734.8 ENSMUSP00000126278.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163734.8Link to Ensembl Protein Viewer:ENSMUSP00000126278.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000163734Re-query CCDS DB by Protein ID:ENSMUSP00000126278
Original member Current member NCBI NM_001256044.1 NP_001242973.1 Accepted alive Link to Nucleotide Sequence:NM_001256044.1Link to Protein Sequence:NP_001242973.1Re-query CCDS DB by Nucleotide ID:NM_001256044Re-query CCDS DB by Protein ID:NP_001242973Link to BLAST:NP_001242973.1

Chromosomal Locations for CCDS 57640.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 105269945 105269996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105270769 105270896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105270988 105271112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105271374 105271449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105271585 105271649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105272106 105272208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105272460 105272584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105272706 105272933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105274646 105274751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105274848 105274913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105275043 105275112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105275504 105275658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1299 nt):
ATGGGCGCTGGTAGGCGACCCAGGCACCGACCACCTCATCCGCTGGAGCCCGATGGTTTTCGGAAGGTGG
TGAGCATCGAGCAAGGTGGCCTGCTCAGACCAGAGCGTGACCACGTTGAGTTTCAGCATCCGAGCTTCGT
GCGAGGCCGCGAGCAGCTACTGGAGCGCGTGCGCCGCAAGGTACCTGCGCTGCGAGGCGATGACAGTCGA
TGGCGTCCGGAAGACCTGAGCCGACTGCTGGGAGAGGTGCAAGCTTTGAGAGGAGTGCAGGAGAGCACGG
AGGCACGGCTGCAGGAACTCAGGCAGCAGAACGAGATCTTGTGGCGAGAGGTGGTAACTTTGCGGCAGAG
CCACAGTCAGCAGCACCGGGTCATCGGCAAGCTAATCCAGTGCCTGTTTGGGCCACTTCAGACAGGGCCC
AGCAGTACAGGAGCCAAGAGAAAACTGTCCCTAATGCTAGATGAGGGGAGCGCCTGTTCAGCATCTGCCA
AATTCAATGCCTGCCCTGTGTCTGGTGCTCTCCTCCAGGACCCCTACTTTATCCAGTCGCCCCTCCCAGA
GACCACGTTGGGCCTCAGCCCTCACAGGGCCAGAGGGCCCATCATCTCTGACATCCCAGAAGATTCTCCA
TCTCCTGAAGGACACAGGCTTTCTCCCTCCGGTGGTTGCAGGAGGGTGAAGGGCCTGGCACTGCTCAAAG
AAGAGCCGGCCAGTCCAGGGGGGGATGGCGAGGCCGGGCTGGCCCTGGCCCCAAACGAGTGTGACTTCTG
CGTGACAGCACCCCCACCGCTGCCCGTGGCTGTGGTGCAGGCCATCCTGGAAGGGAAAGGGAGCTACAGC
CCTGAGGGGCCCAGGAGTGTACAACAGCCTGAACCAAGGGGCCCCAGGGAGGTACCTGACAGGGGAACTC
TGGGCCTGGATCGGGGTAACCGGAGCCCAGAGAGTCTGCTACCCCCAATGCTGCTTCGGCCTGCCCCTGA
AACTCTGGAGCCCGTGGCACCTGTGGATGTGCTCGGCCCTAGCCTGCATGGACGAGAATGGACCTTGATG
GATCTGGACATGGAGTTGTCTCTGATGCAGCCCTTGGCACCAGAGACGGATGAAGCAGAGCTGACGGTCA
AGGAGTTGAATTCTTCTGGTGTAGGGAAAGACCACACACTGGGAACTCCACTCATGCTAGATGTCCAGGC
GGATTTGGAGGGTGCAGCCCTGTCTGTGCCTGGGGCTTTAACCCTGTACAACGTCACCGAGAGCAACGCC
TCCTACTTGGATCCTGGAGCCAGTCCCTCCTCTCCCTGA

Translation (432 aa):
MGAGRRPRHRPPHPLEPDGFRKVVSIEQGGLLRPERDHVEFQHPSFVRGREQLLERVRRKVPALRGDDSR
WRPEDLSRLLGEVQALRGVQESTEARLQELRQQNEILWREVVTLRQSHSQQHRVIGKLIQCLFGPLQTGP
SSTGAKRKLSLMLDEGSACSASAKFNACPVSGALLQDPYFIQSPLPETTLGLSPHRARGPIISDIPEDSP
SPEGHRLSPSGGCRRVKGLALLKEEPASPGGDGEAGLALAPNECDFCVTAPPPLPVAVVQAILEGKGSYS
PEGPRSVQQPEPRGPREVPDRGTLGLDRGNRSPESLLPPMLLRPAPETLEPVAPVDVLGPSLHGREWTLM
DLDMELSLMQPLAPETDEAELTVKELNSSGVGKDHTLGTPLMLDVQADLEGAALSVPGALTLYNVTESNA
SYLDPGASPSSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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