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Report for CCDS58674.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58674.1 Public Homo sapiens 19 SPIB 24 110 108 CCDS HistoryNCBI Gene:6689Re-query CCDS DB by CCDS ID:58674.1Re-query CCDS DB by GeneID:6689See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 58674.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000439922.6 ENSP00000391877.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000439922.6Link to Ensembl Protein Viewer:ENSP00000391877.2Re-query CCDS DB by Nucleotide ID:ENST00000439922Re-query CCDS DB by Protein ID:ENSP00000391877
Original member Current member NCBI NM_001243998.2 NP_001230927.1 Accepted alive Link to Nucleotide Sequence:NM_001243998.2Link to Protein Sequence:NP_001230927.1Re-query CCDS DB by Nucleotide ID:NM_001243998Re-query CCDS DB by Protein ID:NP_001230927Link to BLAST:NP_001230927.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001230927.1 171 Q01892-3 171 100% 0 0

Chromosomal Locations for CCDS 58674.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 50422480 50422545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50423605 50423755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50428038 50428336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (516 nt):
ATGGCGTCTTCTATGACCTGGACAGCTGCAAGCATTCCAGCTACCCTGATTCAGAGGGGGCTCCTGACCC
TGGTTCCCCCGGCATATGCCCCGTACCCCAGCCCTGTGCTATCAGAGGAGGAAGACTTACCGTTGGACAG
CCCTGCCCTGGAGGTCTCGGACAGCGAGTCGGATGAGGCCCTCGTGGCTGGCCCCGAGGGGAAGGGATCC
GAGGCAGGGACTCGCAAGAAGCTGCGCCTGTACCAGTTCCTGCTGGGGCTACTGACGCGCGGGGACATGC
GTGAGTGCGTGTGGTGGGTGGAGCCAGGCGCCGGCGTCTTCCAGTTCTCCTCCAAGCACAAGGAACTCCT
GGCGCGCCGCTGGGGCCAGCAGAAGGGGAACCGCAAGCGCATGACCTACCAGAAGCTGGCGCGCGCCCTC
CGAAACTACGCCAAGACCGGCGAGATCCGCAAGGTCAAGCGCAAGCTCACCTACCAGTTCGACAGCGCGC
TGCTGCCTGCAGTCCGCCGGGCCTGA

Translation (171 aa):
MASSMTWTAASIPATLIQRGLLTLVPPAYAPYPSPVLSEEEDLPLDSPALEVSDSESDEALVAGPEGKGS
EAGTRKKLRLYQFLLGLLTRGDMRECVWWVEPGAGVFQFSSKHKELLARRWGQQKGNRKRMTYQKLARAL
RNYAKTGEIRKVKRKLTYQFDSALLPAVRRA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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