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Report for CCDS59263.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59263.1 Public Homo sapiens 16 NPIPA2 24 110 108 CCDS HistoryNCBI Gene:642799Re-query CCDS DB by CCDS ID:59263.1Re-query CCDS DB by GeneID:642799See the combined annotation on chromosome 16 in Sequence Viewer

Public Note for CCDS 59263.1
This gene is one of several nuclear pore complex interacting protein (NPIP) gene copies that are present on chromosome 16. There are no full-length transcripts derived from this gene copy in support of this CCDS representation, and thus its exon combination is inferred based on paralogous transcript alignments, e.g., the mRNA AF132984.1.

Public since: CCDS release 12, NCBI annotation release 104, Ensembl annotation release 71

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 59263.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000553201.1 ENSP00000446882.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000553201.1Link to Ensembl Protein Viewer:ENSP00000446882.1Re-query CCDS DB by Nucleotide ID:ENST00000553201Re-query CCDS DB by Protein ID:ENSP00000446882
Original member Current member NCBI NM_001277324.3 NP_001264253.1 Accepted alive Link to Nucleotide Sequence:NM_001277324.3Link to Protein Sequence:NP_001264253.1Re-query CCDS DB by Nucleotide ID:NM_001277324Re-query CCDS DB by Protein ID:NP_001264253Link to BLAST:NP_001264253.1

Chromosomal Locations for CCDS 59263.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 14750813 14750875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14755192 14755320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14758947 14759046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14759210 14759354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14762312 14762419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14763438 14763498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14763608 14763643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14765003 14765413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGTTTTGTTGCTTAGGATATGAATGGCTGAGCGGAGGCTGTAAAACCTGGCACTCTGCTTGGGTTATCA
AT
ACTCTGGCTGACCATCGTCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACTTATCATTACTGT
G
TTTCTGAGAAGTTATAAATTTGCCATCTCCCTCTGCACAAGTTACCTTTGTGTGTCTTTCCTGAAGACT
ATC
TTCCCGTCTCAAAATGGACATGATGGATCCACGGATGTACAGCAGAGAGCCAGGAGGTCCAACCGCC
GT
AGACAGGAAGGAATTAAAATTGTCCTGGAAGACATCTTTACTTTATGGAGACAGGTGGAAACCAAAGT
T
CGAGCTAAAATCTGTAAGATGAAGGTGACAACAAAAGTCAACCGTCATGACAAAATCAATGGAAAGAGG
AAG
ACCGCCAAAGAACATCTGAGGAAACTAAGCATGAAAGAACGTGAGCACGGAGAAAAGGAGAGGCAGG
TG
TCAGAGGCAGAGGAAAACGGGAAATTGGATATGAAAGAAATACACACCTACATGGAAATGTTTCAACG
T
GCGCAAGCGTTGCGGCGGCGGGCAGAGGACTACTACAGATGCAAAATCACCCCTTCTGCAAGAAAGCCT
CTT
TGCAACCGGGTCAGAATGGCGGCAGCGGAGCATCGTCATTCTTCAGGATTGCCCTACTGGCCCTACC
TC
ACAGCTGAAACTTTAAAAAACAGGATGGGCCACCAGCCACCTCCTCCAACTCAACAACATTCTATAAT
T
GATAACTCCCTGAGCCTCAAGACACCTCCCGAGTGTCTGCTCACTCCCCTTCCACCCTCAGCTCTACCC
TCA
GCGGATGATAATCTCAAGACACCTGCGGAGTGTCTGCTCTATCCCCTTCCACCCTCAGCGGATGATA
AT
CTCAAGACACCTCCCGAGTGTCTGCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAGCGGATGATAA
T
CTCAAGACACCTCCCAAGTGTGTCTGCTCACTCCCCTTCCACCCTCAGCGGATGATAATCTCAAGAAAC
TAA


Translation (350 aa):
MFCCLGYEWLSGGCKTWHSAWVINTLADHRHRGTDFGGSPWLLIITVFLRSYKFAISLCTSYLCVSFLKT
I
FPSQNGHDGSTDVQQRARRSNRRRQE
GIKIVLEDIFTLWRQVETKVRAKICKMKVTTKVNRHDKINGKR
K
TAKE
HLRKLSMKEREHGEKERQVSEAEENGKLDMKEIHTYMEMFQRAQALRRRAEDYYRCKITPSARKP
L
CNR
VRMAAAEHRHSSGLPYWPYLTAETLKNRMGHQPPPPTQQHSIIDNSLSLKTPPECLLTPLPPSALP
S
ADDNLKTPAECLLYPLPPSADDNLKTPPECLLTPLPPSAPPSADDNLKTPPKCVCSLPFHPQRMIISRN




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 Genome Browser Links:   Ensembl Genome Browser
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