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Report for CCDS6087.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6087.1 Public Homo sapiens 8 NRG1 24 110 108 CCDS HistoryNCBI Gene:3084Re-query CCDS DB by CCDS ID:6087.1Re-query CCDS DB by GeneID:3084See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6087.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000520502.7 ENSP00000433289.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000520502.7Link to Ensembl Protein Viewer:ENSP00000433289.1Re-query CCDS DB by Nucleotide ID:ENST00000520502Re-query CCDS DB by Protein ID:ENSP00000433289
Original member Current member NCBI NM_013959.4 NP_039253.1 Accepted alive Link to Nucleotide Sequence:NM_013959.4Link to Protein Sequence:NP_039253.1Re-query CCDS DB by Nucleotide ID:NM_013959Re-query CCDS DB by Protein ID:NP_039253Link to BLAST:NP_039253.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_039253.1 296 Q02297-10 296 100% 0 0

Chromosomal Locations for CCDS 6087.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 32647718 32648384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 32727949 32728078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 32742675 32742768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (891 nt):
ATGGAGATTTATTCCCCAGACATGTCTGAGGTCGCCGCCGAGAGGTCCTCCAGCCCCTCCACTCAGCTGA
GTGCAGACCCATCTCTTGATGGGCTTCCGGCAGCAGAAGACATGCCAGAGCCCCAGACTGAAGATGGGAG
AACCCCTGGACTCGTGGGCCTGGCCGTGCCCTGCTGTGCGTGCCTAGAAGCTGAGCGCCTGAGAGGTTGC
CTCAACTCAGAGAAAATCTGCATTGTCCCCATCCTGGCTTGCCTGGTCAGCCTCTGCCTCTGCATCGCCG
GCCTCAAGTGGGTATTTGTGGACAAGATCTTTGAATATGACTCTCCTACTCACCTTGACCCTGGGGGGTT
AGGCCAGGACCCTATTATTTCTCTGGACGCAACTGCTGCCTCAGCTGTGTGGGTGTCGTCTGAGGCATAC
ACTTCACCTGTCTCTAGGGCTCAATCTGAAAGTGAGGTTCAAGTTACAGTGCAAGGTGACAAGGCTGTTG
TCTCCTTTGAACCATCAGCGGCACCGACACCGAAGAATCGTATTTTTGCCTTTTCTTTCTTGCCGTCCAC
TGCGCCATCCTTCCCTTCACCCACCCGGAACCCTGAGGTGAGAACGCCCAAGTCAGCAACTCAGCCACAA
ACAACAGAAACTAATCTCCAAACTGCTCCTAAACTTTCTACATCTACATCCACCACTGGGACAAGCCATC
TTGTAAAATGTGCGGAGAAGGAGAAAACTTTCTGTGTGAATGGAGGGGAGTGCTTCATGGTGAAAGACCT
TTCAAACCCCTCGAGATACTTGTGCAAGTGCCCAAATGAGTTTACTGGTGATCGCTGCCAAAACTACGTA
ATGGCCAGCTTCTACAGTACGTCCACTCCCTTTCTGTCTCTGCCTGAATAG

Translation (296 aa):
MEIYSPDMSEVAAERSSSPSTQLSADPSLDGLPAAEDMPEPQTEDGRTPGLVGLAVPCCACLEAERLRGC
LNSEKICIVPILACLVSLCLCIAGLKWVFVDKIFEYDSPTHLDPGGLGQDPIISLDATAASAVWVSSEAY
TSPVSRAQSESEVQVTVQGDKAVVSFEPSAAPTPKNRIFAFSFLPSTAPSFPSPTRNPEVRTPKSATQPQ
TTETNLQTAPKLSTSTSTTGTSHLVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGDRCQNYV
MASFYSTSTPFLSLPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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