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Report for CCDS64420.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
64420.1 Public Homo sapiens 6 TREML1 24 110 108 CCDS HistoryNCBI Gene:340205Re-query CCDS DB by CCDS ID:64420.1Re-query CCDS DB by GeneID:340205See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 64420.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000437044.2 ENSP00000400405.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000437044.2Link to Ensembl Protein Viewer:ENSP00000400405.1Re-query CCDS DB by Nucleotide ID:ENST00000437044Re-query CCDS DB by Protein ID:ENSP00000400405
Original member Current member NCBI NM_001271808.1 NP_001258737.1 Accepted alive Link to Nucleotide Sequence:NM_001271808.1Link to Protein Sequence:NP_001258737.1Re-query CCDS DB by Nucleotide ID:NM_001271808Re-query CCDS DB by Protein ID:NP_001258737Link to BLAST:NP_001258737.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258737.1 200 Q86YW5-3 200 100% 0 0

Chromosomal Locations for CCDS 64420.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 41149604 41149918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41150261 41150313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41150819 41150907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41151282 41151384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41154246 41154288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (603 nt):
ATGGGCCTCACCCTGCTCTTGCTGCTGCTCCTGGGACTAGAAGAGGAAGAAGAAGAGACCCATAAGATTG
GC
AGTCTGGCTGAGAACGCATTCTCAGACCCTGCAGGCAGTGCCAACCCTTTGGAACCCAGCCAGGATGA
G
AAGAGCATCCCCTTGATCTGGGGTGCTGTGCTCCTGGTAGGTCTGCTGGTGGCAGCGGTGGTGCTGTTT
GCT
GTGATGGCCAAGAGGAAACAAGGGAACAGGCTTGGTGTCTGTGGCCGATTCCTGAGCAGCAGAGTTT
CA
GGCATGAATCCCTCCTCAGTGGTCCACCACGTCAGTGACTCTGGACCGGCTGCTGAATTGCCTTTGGA
T
GTACCACACATTAGGCTTGACTCACCACCTTCATTTGACAATACCACCTACACCAGCCTACCTCTTGAT
TCC
CCATCAGGAAAACCTTCACTCCCAGCTCCATCCTCATTGCCCCCTCTACCTCCTAAGGTCCTGGTCT
GC
TCCAAGCCTGTGACATATGCCACAGTAATCTTCCCGGGAGGGAACAAGGGTGGAGGGACCTCGTGTGG
G
CCAGCCCAGAATCCACCTAACAATCAGACTCCATCCAGCTAA


Translation (200 aa):
MGLTLLLLLLLGLEEEEEETHKIGSLAENAFSDPAGSANPLEPSQDEKSIPLIWGAVLLVGLLVAAVVLF
A
VMAKRKQ
GNRLGVCGRFLSSRVSGMNPSSVVHHVSDSGPAAELPLDVPHIRLDSPPSFDNTTYTSLPLD
S
PSGKPSLPAPSSLPPLPPKVLVCSKPVTYATVIFPGGNKGGGTSCGPAQNPPNNQTPSS




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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