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Report for CCDS64953.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
64953.1 Public Homo sapiens 8 RSPO2 24 110 108 CCDS HistoryNCBI Gene:340419Re-query CCDS DB by CCDS ID:64953.1Re-query CCDS DB by GeneID:340419See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 64953.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000517781.5 ENSP00000427937.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000517781.5Link to Ensembl Protein Viewer:ENSP00000427937.1Re-query CCDS DB by Nucleotide ID:ENST00000517781Re-query CCDS DB by Protein ID:ENSP00000427937
Original member Current member NCBI NM_001282863.2 NP_001269792.1 Accepted alive Link to Nucleotide Sequence:NM_001282863.2Link to Protein Sequence:NP_001269792.1Re-query CCDS DB by Nucleotide ID:NM_001282863Re-query CCDS DB by Protein ID:NP_001269792Link to BLAST:NP_001269792.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269792.1 179 Q6UXX9-3 179 100% 0 0

Chromosomal Locations for CCDS 64953.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 107901075 107901190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 107958080 107958265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 107960674 107960817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 108082545 108082638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (540 nt):
ATGCAGTTTCGCCTTTTCTCCTTTGCCCTCATCATTCTGAACTGCATGGATTACAGCCACTGCCAAGGCA
ACCGATGGAGACGCAGTAAGCGAGGATGCAGAATAGAAAACTGTGATTCTTGCTTTAGCAAAGACTTTTG
TACCAAGTGCAAAGTAGGCTTTTATTTGCATAGAGGCCGTTGCTTTGATGAATGTCCAGATGGTTTTGCA
CCATTAGAAGAAACCATGGAATGTGTGGGATGTGAAGTTGGTCATTGGAGCGAATGGGGAACTTGTAGCA
GAAATAATCGCACATGTGGATTTAAATGGGGTCTGGAAACCAGAACACGGCAAATTGTTAAAAAGCCAGT
GAAAGACACAATACTGTGTCCAACCATTGCTGAATCCAGGAGATGCAAGATGACAATGAGGCATTGTCCA
GGAGGGAAGAGAACACCAAAGGCGAAGGAGAAGAGGAACAAGAAAAAGAAAAGGAAGCTGATAGAAAGGG
CCCAGGAGCAACACAGCGTCTTCCTAGCTACAGACAGAGCTAACCAATAA

Translation (179 aa):
MQFRLFSFALIILNCMDYSHCQGNRWRRSKRGCRIENCDSCFSKDFCTKCKVGFYLHRGRCFDECPDGFA
PLEETMECVGCEVGHWSEWGTCSRNNRTCGFKWGLETRTRQIVKKPVKDTILCPTIAESRRCKMTMRHCP
GGKRTPKAKEKRNKKKKRKLIERAQEQHSVFLATDRANQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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