NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS66518.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
66518.1 Public Homo sapiens 13 SPATA13 24 110 108 CCDS HistoryNCBI Gene:221178Re-query CCDS DB by CCDS ID:66518.1Re-query CCDS DB by GeneID:221178See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 66518.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000343003.10 ENSP00000343631.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000343003.10Link to Ensembl Protein Viewer:ENSP00000343631.6Re-query CCDS DB by Nucleotide ID:ENST00000343003Re-query CCDS DB by Protein ID:ENSP00000343631
Original member Current member NCBI NM_001286794.2 NP_001273723.1 Accepted alive Link to Nucleotide Sequence:NM_001286794.2Link to Protein Sequence:NP_001273723.1Re-query CCDS DB by Nucleotide ID:NM_001286794Re-query CCDS DB by Protein ID:NP_001273723Link to BLAST:NP_001273723.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273723.1 596 Q96N96-3 596 100% 0 0

Chromosomal Locations for CCDS 66518.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 24278701 24278821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24284135 24284271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24286214 24286393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24286765 24286950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24288999 24289178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24290652 24290884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24294739 24294868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24297363 24297735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24300401 24300475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24302598 24302773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1791 nt):
ATGGGTTTTATCATCCACATTCAACAGGTGAAAAAACAAAGAAAGAAACTTGACCAAGGACTCATACTCA
AAAAAGAAAAATATAGAAAAGAAAAAAAATGTGCATCGCTATCATTTGAAGTTTCTTCAGATGGAGGTAC
TGAGCCCTCTGCCTTAGTGGATGACAACGGTAGTGAGGAGGACTTCAGCTATGAAGACCTCTGCCAGGCC
AGCCCTCGGTACCTGCAGCCCGGCGGGGAGCAGCTGGCCATCAATGAGCTGATCAGTGATGGCAACGTGG
TCTGCGCAGAAGCCCTGTGGGACCATGTGACCATGGATGACCAGGAACTGGGCTTCAAAGCCGGGGATGT
CATCCAGGTTCTGGAAGCCTCCAACAAGGACTGGTGGTGGGGCCGCAGTGAAGATAAGGAAGCCTGGTTC
CCCGCGAGCTTCGTCAGATTGCGAGTGAATCAGGAAGAGCTGTCGGAAAACTCCAGCAGCACCCCCAGTG
AGGAGCAGGACGAGGAGGCCAGCCAGAGCCGCCACAGACACTGTGAGAACAAGCAGCAGATGCGGACCAA
CGTCATCCGGGAGATCATGGACACCGAGCGGGTGTACATCAAACACCTCAGGGACATCTGTGAGGGCTAT
ATCCGACAGTGCCGCAAGCACACAGGAATGTTCACCGTTGCGCAGCTAGCCACTATTTTTGGAAACATTG
AAGATATTTACAAATTCCAAAGAAAGTTTCTGAAAGACCTTGAGAAACAGTACAACAAAGAGGAACCTCA
CTTAAGTGAAATAGGATCTTGCTTTCTTCAAAATCAAGAGGGCTTTGCCATCTATTCCGAGTACTGCAAC
AACCACCCGGGCGCCTGCCTGGAGCTCGCCAACCTCATGAAGCAGGGCAAGTACAGACATTTCTTTGAAG
CCTGCCGCCTGCTGCAGCAGATGATTGACATCGCCATCGACGGGTTCCTGCTCACACCAGTGCAGAAGAT
CTGCAAATACCCGCTGCAGCTGGCCGAGCTGCTCAAGTATACCACACAGGAACACGGTGATTACAGCAAC
ATAAAGGCAGCATATGAGGCCATGAAGAATGTGGCCTGTCTGATCAACGAGCGCAAGCGCAAGCTGGAGA
GCATCGACAAGATAGCTCGCTGGCAGGTGTCTATCGTGGGCTGGGAGGGACTGGATATCTTAGACCGAAG
CTCAGAATTGATTCATTCTGGGGAGCTGACCAAAATCACTAAGCAAGGCAAAAGCCAGCAGCGGACGTTC
TTCCTGTTTGACCACCAGCTGGTGTCCTGCAAGAAGGACCTGCTGCGCAGGGACATGCTGTACTACAAGG
GCCGGCTGGACATGGATGAGATGGAGCTTGTGGACCTGGGGGATGGGCGCGACAAGGACTGCAACCTCAG
CGTGAAAAATGCCTTCAAGCTCGTCAGTAGGACCACAGACGAGGTTTATTTGTTTTGTGCCAAAAAACAA
GAAGACAAGGCGAGGTGGCTGCAGGCCTGTGCAGATGAAAGGAGGCGGGTGCAAGAGGACAAGGAGATGG
GAATGGAAATTTCAGAAAACCAGAAGAAACTTGCCATGTTAAATGCTCAAAAGGCAGGACATGGAAAGTC
AAAAGGCTACAACAGGTGCCCTGTGGCCCCACCGCACCAGGGCCTGCACCCCATCCACCAGCGCCACATC
ACTATGCCCACAAGCGTCCCCCAGCAGCAGGTCTTTGGCCTGGCGGAACCCAAGAGGAAGTCCTCGCTCT
TCTGGCACACCTTCAACAGGCTCACCCCCTTCCGGAAATGA

Translation (596 aa):
MGFIIHIQQVKKQRKKLDQGLILKKEKYRKEKKCASLSFEVSSDGGTEPSALVDDNGSEEDFSYEDLCQA
SPRYLQPGGEQLAINELISDGNVVCAEALWDHVTMDDQELGFKAGDVIQVLEASNKDWWWGRSEDKEAWF
PASFVRLRVNQEELSENSSSTPSEEQDEEASQSRHRHCENKQQMRTNVIREIMDTERVYIKHLRDICEGY
IRQCRKHTGMFTVAQLATIFGNIEDIYKFQRKFLKDLEKQYNKEEPHLSEIGSCFLQNQEGFAIYSEYCN
NHPGACLELANLMKQGKYRHFFEACRLLQQMIDIAIDGFLLTPVQKICKYPLQLAELLKYTTQEHGDYSN
IKAAYEAMKNVACLINERKRKLESIDKIARWQVSIVGWEGLDILDRSSELIHSGELTKITKQGKSQQRTF
FLFDHQLVSCKKDLLRRDMLYYKGRLDMDEMELVDLGDGRDKDCNLSVKNAFKLVSRTTDEVYLFCAKKQ
EDKARWLQACADERRRVQEDKEMGMEISENQKKLAMLNAQKAGHGKSKGYNRCPVAPPHQGLHPIHQRHI
TMPTSVPQQQVFGLAEPKRKSSLFWHTFNRLTPFRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH