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Report for CCDS6990.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6990.1 Public Homo sapiens 9 MRPS2 24 110 108 CCDS HistoryNCBI Gene:51116Re-query CCDS DB by CCDS ID:6990.1Re-query CCDS DB by GeneID:51116See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 6990.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000241600.10 ENSP00000241600.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000241600.10Link to Ensembl Protein Viewer:ENSP00000241600.5Re-query CCDS DB by Nucleotide ID:ENST00000241600Re-query CCDS DB by Protein ID:ENSP00000241600
Original member Current member EBI ENST00000371785.5 ENSP00000360850.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000371785.5Link to Ensembl Protein Viewer:ENSP00000360850.1Re-query CCDS DB by Nucleotide ID:ENST00000371785Re-query CCDS DB by Protein ID:ENSP00000360850
Original member Current member NCBI NM_001371401.1 NP_001358330.1 Accepted alive Link to Nucleotide Sequence:NM_001371401.1Link to Protein Sequence:NP_001358330.1Re-query CCDS DB by Nucleotide ID:NM_001371401Re-query CCDS DB by Protein ID:NP_001358330Link to BLAST:NP_001358330.1
Original member Current member NCBI NM_016034.5 NP_057118.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016034.5Link to Protein Sequence:NP_057118.1Re-query CCDS DB by Nucleotide ID:NM_016034Re-query CCDS DB by Protein ID:NP_057118Link to BLAST:NP_057118.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001358330.1 296 Q9Y399 296 100% 0 0
NP_057118.1 296 Q9Y399 296 100% 0 0

Chromosomal Locations for CCDS 6990.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 135500711 135500753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135500998 135501123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135501844 135501973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135503542 135504133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (891 nt):
ATGGCGACATCCTCGGCCGCGCTGCCCCGAATACTCGGCGCGGGTGCCCGGGCCCCGTCGCGCTGGTTGG
GCTTTCTCGGGAAGGCGACCCCCCGGCCTGCTCGGCCGAGCCGCAGGACGCTTGGAAGCGCGACGGCCCT
TATGATCCGCGAGTCGGAGGACAGCACCGATTTCAACGACAAGATTTTGAATGAGCCCCTCAAGCACTCT
GACTTCTTCAATGTCAAGGAACTGTTTTCCGTGAGAAGCCTCTTCGATGCCCGAGTCCATCTGGGACACA
AAGCTGGCTGTCGGCACAGGTTTATGGAGCCGTACATCTTTGGGAGCCGCCTGGACCACGACATCATCGA
CCTGGAACAGACAGCCACGCACCTCCAGCTGGCCTTGAACTTCACCGCCCACATGGCCTACCGCAAGGGC
ATCATCTTGTTTATAAGCCGCAACCGGCAGTTCTCGTACCTGATTGAGAACATGGCCCGTGACTGTGGCG
AGTACGCCCACACTCGCTACTTCAGGGGCGGCATGCTGACCAACGCGCGCCTCCTCTTTGGCCCCACGGT
CCGCCTGCCGGACCTCATCATCTTCCTGCACACGCTCAACAACATCTTTGAGCCACACGTGGCCGTGAGA
GACGCAGCCAAGATGAACATCCCCACAGTGGGCATCGTGGACACCAACTGCAACCCCTGCCTCATCACCT
ACCCTGTACCCGGCAATGACGACTCTCCGCTGGCTGTGCACCTCTACTGCAGGCTCTTCCAGACGGCCAT
CACCCGGGCCAAGGAGAAGCGGCAGCAGGTTGAGGCTCTCTATCGCCTGCAGGGCCAGAAGGAGCCCGGG
GACCAGGGGCCAGCCCACCCTCCTGGGGCTGACATGAGCCATTCCCTGTGA

Translation (296 aa):
MATSSAALPRILGAGARAPSRWLGFLGKATPRPARPSRRTLGSATALMIRESEDSTDFNDKILNEPLKHS
DFFNVKELFSVRSLFDARVHLGHKAGCRHRFMEPYIFGSRLDHDIIDLEQTATHLQLALNFTAHMAYRKG
IILFISRNRQFSYLIENMARDCGEYAHTRYFRGGMLTNARLLFGPTVRLPDLIIFLHTLNNIFEPHVAVR
DAAKMNIPTVGIVDTNCNPCLITYPVPGNDDSPLAVHLYCRLFQTAITRAKEKRQQVEALYRLQGQKEPG
DQGPAHPPGADMSHSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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