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Report for CCDS7.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7.2 Public Homo sapiens 1 C1orf159 24 110 108 CCDS HistoryNCBI Gene:54991Re-query CCDS DB by CCDS ID:7.2Re-query CCDS DB by GeneID:54991See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 7.1
The coding region has been updated to represent an alternative splice pattern, resulting in an altered 3' coding region and an extended protein N-terminal that is better supported by available transcript and homology data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 7.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379319.5 ENSP00000368623.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379319.5Link to Ensembl Protein Viewer:ENSP00000368623.1Re-query CCDS DB by Nucleotide ID:ENST00000379319Re-query CCDS DB by Protein ID:ENSP00000368623
Original member Current member EBI ENST00000421241.7 ENSP00000400736.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000421241.7Link to Ensembl Protein Viewer:ENSP00000400736.2Re-query CCDS DB by Nucleotide ID:ENST00000421241Re-query CCDS DB by Protein ID:ENSP00000400736
Original member Current member NCBI NM_017891.5 NP_060361.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017891.5Link to Protein Sequence:NP_060361.4Re-query CCDS DB by Nucleotide ID:NM_017891Re-query CCDS DB by Protein ID:NP_060361Link to BLAST:NP_060361.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060361.4 198 Q96HA4-4 198 100% 0 0

Chromosomal Locations for CCDS 7.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 1082893 1082987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1084353 1084383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1084481 1084506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1085878 1086012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1087139 1087204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1087502 1087597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1090353 1090428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1091472 1091543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (597 nt):
ATGGCGCTGCGGCACCTCGCCCTCCTGGCTGGCCTTCTCGTGGGAGTCGCCAGCAAGTCCATGGAGAACA
CGGCCCAGCTGCCCGAGTGCTGTGTGGATGTGGTGGGCGTCAACGCCAGCTGCCCAGGCGCAAGTCTGTG
TGGTCCAGGCTGTTACAGGCGCTGGAACGCGGACGGGAGCGCCAGCTGCGTCCGCTGTGGGAACGGAACC
CTCCCAGCCTACAACGGCTCCGAGTGTAGAAGCTTTGCTGGCCCGGGTGCGCCATTCCCCATGAACAGAA
GCTCAGGGACCCCCGGGCGGCCACATCCTGGGGCTCCGCGCGTGGCCGCCTCCCTCTTCCTGGGCACGTT
CTTCATTAGCTCCGGCCTCATCCTCTCCGTAGCTGGGTTCTTCTACCTCAAGCGCTCCAGTAAACTCCCC
AGGGCCTGCTACAGAAGAAACAAAGCTCCGGCCCTGCAGCCTGGCGAAGCCGCTGCAATGATCCCCCCGC
CACAGTCCTCAGTACGGAAGCCGCGCTACGTCAGGCGGGAGCGGCCCCTGGACAGGGCCACGGATCCCGC
TGCCTTCCCGGGGGAGGCCCGTATCAGCAATGTCTGA

Translation (198 aa):
MALRHLALLAGLLVGVASKSMENTAQLPECCVDVVGVNASCPGASLCGPGCYRRWNADGSASCVRCGNGT
LPAYNGSECRSFAGPGAPFPMNRSSGTPGRPHPGAPRVAASLFLGTFFISSGLILSVAGFFYLKRSSKLP
RACYRRNKAPALQPGEAAAMIPPPQSSVRKPRYVRRERPLDRATDPAAFPGEARISNV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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