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Report for CCDS70277.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70277.1 Public Mus musculus 11 Septin4 23 108 98 CCDS HistoryNCBI Gene:18952Re-query CCDS DB by CCDS ID:70277.1Re-query CCDS DB by GeneID:18952See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70277.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063156.10 ENSMUSP00000060127.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063156.10Link to Ensembl Protein Viewer:ENSMUSP00000060127.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000063156Re-query CCDS DB by Protein ID:ENSMUSP00000060127
Original member NCBI NM_001284392.1 NP_001271321.1 Updated not alive Link to Nucleotide Sequence:NM_001284392.1Link to Protein Sequence:NP_001271321.1Re-query CCDS DB by Nucleotide ID:NM_001284392Re-query CCDS DB by Protein ID:NP_001271321
Current member NCBI NM_001284392.2 NP_001271321.1 Accepted alive Link to Nucleotide Sequence:NM_001284392.2Link to Protein Sequence:NP_001271321.1Re-query CCDS DB by Nucleotide ID:NM_001284392Re-query CCDS DB by Protein ID:NP_001271321Link to BLAST:NP_001271321.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001271321.1 379 P28661-4 379 100% 0 0

Chromosomal Locations for CCDS 70277.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 87581166 87581225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87583921 87584014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87584399 87584485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87585118 87585241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87588718 87588852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87588968 87589085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87589175 87589276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87589468 87589564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87589656 87589818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87589956 87590055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87590316 87590375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1140 nt):
ATGGACCATTCACTGGGATGGCAAGGGAACTCTGTCCCCGAGGACGGGACTGAAGCTGGGGATGACAAGG
AGTATGTGGGCTTTGCAACCCTCCCCAATCAAGTCCACAGGAAGTCTGTGAAGAAAGGCTTTGACTTTAC
ACTCATGGTGGCAGGAGAATCTGGTCTGGGTAAATCCACTCTTGTCAACAGCCTCTTCCTCACTGACTTG
TACCGGGATCGGAAACTGCTGGGCGCCGAAGAGCGGATCATGCAAACCGTGGAGATTACTAAGCACGCAG
TGGATATAGAAGAGAAGGGAGTGAGGCTGCGGCTCACCATTGTGGACACTCCAGGATTTGGGGATGCAGT
CAACAACACAGAGTGCTGGAAGCCTGTGGCCGAATACATCGACCAGCAGTTTGAGCAGTACTTCCGAGAC
GAGAGTGGCCTGAACCGCAAGAACATCCAGGACAACCGGGTGCACTGCTGCCTGTACTTCATCTCCCCGT
TTGGCCACGGGCTCCGGCCATTGGATGTTGAATTCATGAAGGCCCTGCATCAGCGGGTCAACATTGTGCC
TATCTTGGCTAAGGCGGACACACTGACGCCTCCTGAAGTGGACCGAAAGAAATGCAAAATCCGGGAGGAG
ATCGAGCACTTTGGAATCAAGATCTATCAGTTCCCAGACTGTGATTCCGATGAGGACGAGGACTTCAAAT
TACAGGACCAAGCCCTAAAGGAAAGCATCCCATTTGCGGTGATTGGCAGCAACACTGTGGTAGAAGCCAG
GGGGCGGAGAGTTCGAGGCCGCCTCTACCCTTGGGGCATCGTGGAAGTGGAAAACCCAGGTCACTGCGAC
TTTGTCAAGTTGAGGACGATGCTGGTGCGTACCCACATGCAGGACCTAAAGGATGTGACCCGAGAGACAC
ACTACGAGAACTACAGGGCACAGTGTATCCAGAGCATGACCCGGCTAGTAGTGAAGGAACGGAATCGCAA
CAAACTGACAAGAGAGAGTGGTACTGACTTCCCTATCCCTGCTGTCCCACCAGGGACAGATCCAGAAACT
GAGAAGCTAATCCGGGAGAAAGACGAAGAGCTGCGGCGGATGCAGGAGATGTTACACAAAATCCAAAGAC
AGATGAAGGAGACTCACTAA

Translation (379 aa):
MDHSLGWQGNSVPEDGTEAGDDKEYVGFATLPNQVHRKSVKKGFDFTLMVAGESGLGKSTLVNSLFLTDL
YRDRKLLGAEERIMQTVEITKHAVDIEEKGVRLRLTIVDTPGFGDAVNNTECWKPVAEYIDQQFEQYFRD
ESGLNRKNIQDNRVHCCLYFISPFGHGLRPLDVEFMKALHQRVNIVPILAKADTLTPPEVDRKKCKIREE
IEHFGIKIYQFPDCDSDEDEDFKLQDQALKESIPFAVIGSNTVVEARGRRVRGRLYPWGIVEVENPGHCD
FVKLRTMLVRTHMQDLKDVTRETHYENYRAQCIQSMTRLVVKERNRNKLTRESGTDFPIPAVPPGTDPET
EKLIREKDEELRRMQEMLHKIQRQMKETH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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