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Report for CCDS71060.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71060.1 Public Mus musculus 2 Csrnp3 23 108 98 CCDS HistoryNCBI Gene:77771Re-query CCDS DB by CCDS ID:71060.1Re-query CCDS DB by GeneID:77771See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71060.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112394.1 ENSMUSP00000108013.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112394.1Link to Ensembl Protein Viewer:ENSMUSP00000108013.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112394Re-query CCDS DB by Protein ID:ENSMUSP00000108013
Original member Current member EBI ENSMUST00000176109.7 ENSMUSP00000135019.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000176109.7Link to Ensembl Protein Viewer:ENSMUSP00000135019.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000176109Re-query CCDS DB by Protein ID:ENSMUSP00000135019
Original member Current member EBI ENSMUST00000145598.8 ENSMUSP00000135605.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000145598.8Link to Ensembl Protein Viewer:ENSMUSP00000135605.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000145598Re-query CCDS DB by Protein ID:ENSMUSP00000135605
Original member Current member NCBI NM_001290665.1 NP_001277594.1 Accepted alive Link to Nucleotide Sequence:NM_001290665.1Link to Protein Sequence:NP_001277594.1Re-query CCDS DB by Nucleotide ID:NM_001290665Re-query CCDS DB by Protein ID:NP_001277594Link to BLAST:NP_001277594.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277594.1 585 P59055-2 585 100% 0 0

Chromosomal Locations for CCDS 71060.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 65948982 65949129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66002303 66002562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66019440 66019736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66021971 66023023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1758 nt):
ATGAGTGGAATTTTAAAGAGGAAGTTCGAAGATGTGGACGCCTCCTCACCATGCTCCTCTGCTCGGGAAT
CGGATGATGAAGTCTCCAGCAGCGAAAGTGCTGACAGCGGGGATAGCGTCAATCCATCCACCTCAAATCA
CTTCACCCCTTCCTCCATCCTGAAAAGGGAGAAACGGCTGAGGACGAAGAATGTACACTTCAGCTGTGTC
ACCGTGTACTACTTCACCAGGAGGCAGGGCTTCACTAGTGTGCCCAGCCAGGGTGGCAGCACTCTGGGGA
TGTCCAGTCGTCACAACAGCGTGCGCCAGTACACCCTGGGCGAGTTTGCGCGAGAGCAGGAGCGCCTGCA
CCGGGAGATGCTGAGAGAACACCTCCGGGAGGAGAAACTCAACTCTCTCAAACTAAAGATGACTAAGAAT
GGCACTGTAGAGTCTGAGGAAGCTAGCACCCTGACCGTGGATGACATTTCCGATGACGATATTGATCTGG
ACAACACCGAAGTGGACGAATACTTCTTCCTACAACCCCTGCCCACAAAAAAGCGGAGAGCTCTGCTGCG
CGCCTCGGGGGTGAAGAAGATCGACGTTGACGAGAAGCACGAACTGCGGGCCATCCGCCTTTCTCGGGAG
GACTGTGGCTGTGACTGCAGAGTGTTCTGTGATCCAGAAACCTGTACCTGCAGCCTGGCAGGCATTAAGT
GTCAGGTGGATCGTATGTCTTTCCCATGTGGCTGCACTAAAGAAGGCTGTAGTAACACAGCAGGTAGAAT
TGAATTCAATCCTATCCGTGTCCGGACTCATTTTTTGCACACAATAATGAAACTTGAACTGGAGAAGAAC
CGAGAGCAACAAACCCCCACGCTGAATGGCTGCCACGGGGAGATAAGCGCCCATGGTCCTTCCATGGGCC
CTGTCGCTCACTCTGTAGAATATTCCATCGCAGACAATTTCGAGATTGAAACCGAACCCCAGGCTGCTGT
GCTGCACCTACAGGAGGAACTGGACTGCCAAGGAGATGAGGAGGAAGAGGAGGAGGACGGAAGCAGTTTC
TGCAGTGGAGCCACTGATTCTAGCACCCAAAGCCTGGCTCCCAGTGAATCGGATGAGGAAGAGGAGGAGG
AGGAAGAAGAAGAGGAAGAGGAGGAGGAAGATGACGACGACGACAAGGGAGATGGCTTTGTAGAAGGGCT
CGGAGCCCATACGGAGGTCGTCCCCCTTCCGTCTGTCCTTTGTTACTCTGATGGCACCGCAGTTCATGAA
AGCCACACAAAAAATGCTTCATTTTACGCTAGCTCTTCAACTCTCTACTACCAAATAGATAGTCACATCC
CAGGAACTCCTAGCCAGCTCTCTGACAACTATTCTGAAAGAGATACTGTCAAAAACGGTGCCCTTTCGCT
GGTGCCTTACGCCATGACCCCAGAGAGGTTTGTTGACTACGCCAGGCAAGCAGAAGAGGCCTATGGAGCC
TCCCACTACCCAGCTGCCAATCCGTCTGTCATCGTTTGCTGCCCCACCTCTGAAAACGATAGTGGGGTGC
CCTGTAACCCCTTGTATCCTGAACACAGGTCCAATCTTCCCCAAGTGGAGTTTCACTCATACTTGAAAGG
CCCTGCCCAGGAAGGGTTTGTTTCCACATTGAATGGCGACAGCCACATTTCAGAGCATCCTGCAGAAAAT
CCTTTGAGCCTTGCAGAAAAGAGCAGATTGCATGAAGAGTGCATTCAGTCCCCCGTGGTGGAAACGGTCC
CCGTTTAG

Translation (585 aa):
MSGILKRKFEDVDASSPCSSARESDDEVSSSESADSGDSVNPSTSNHFTPSSILKREKRLRTKNVHFSCV
TVYYFTRRQGFTSVPSQGGSTLGMSSRHNSVRQYTLGEFAREQERLHREMLREHLREEKLNSLKLKMTKN
GTVESEEASTLTVDDISDDDIDLDNTEVDEYFFLQPLPTKKRRALLRASGVKKIDVDEKHELRAIRLSRE
DCGCDCRVFCDPETCTCSLAGIKCQVDRMSFPCGCTKEGCSNTAGRIEFNPIRVRTHFLHTIMKLELEKN
REQQTPTLNGCHGEISAHGPSMGPVAHSVEYSIADNFEIETEPQAAVLHLQEELDCQGDEEEEEEDGSSF
CSGATDSSTQSLAPSESDEEEEEEEEEEEEEEEDDDDDKGDGFVEGLGAHTEVVPLPSVLCYSDGTAVHE
SHTKNASFYASSSTLYYQIDSHIPGTPSQLSDNYSERDTVKNGALSLVPYAMTPERFVDYARQAEEAYGA
SHYPAANPSVIVCCPTSENDSGVPCNPLYPEHRSNLPQVEFHSYLKGPAQEGFVSTLNGDSHISEHPAEN
PLSLAEKSRLHEECIQSPVVETVPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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