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Report for CCDS72742.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72742.1 Public Homo sapiens 1 ZCCHC17 24 110 108 CCDS HistoryNCBI Gene:51538Re-query CCDS DB by CCDS ID:72742.1Re-query CCDS DB by GeneID:51538See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 72742.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000618216.4 ENSP00000481299.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000618216.4Link to Ensembl Protein Viewer:ENSP00000481299.1Re-query CCDS DB by Nucleotide ID:ENST00000618216Re-query CCDS DB by Protein ID:ENSP00000481299
Original member Current member NCBI NM_001282574.2 NP_001269503.1 Accepted alive Link to Nucleotide Sequence:NM_001282574.2Link to Protein Sequence:NP_001269503.1Re-query CCDS DB by Nucleotide ID:NM_001282574Re-query CCDS DB by Protein ID:NP_001269503Link to BLAST:NP_001269503.1

Chromosomal Locations for CCDS 72742.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 31310099 31310164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31319109 31319166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31337175 31337275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31338957 31339048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31346640 31346740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31364032 31364054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (441 nt):
ATGAATTCAGGAAGGCCTGAGACCATGGAAAACTTGCCTGCTCTCTACACTATTTTCCAAGGAGAGGTTG
CTATGGTGACAGACTATGGGGCCTTTATCAAAATCCCAGGCTGTCGGAAGCAAGGTCTGGTCCATCGAAC
TCATATGTCATCCTGTCGGGTGGATAAGCCCTCTGAGATAGTAGATGTTGGAGATAAAGTGTGGGTGAAG
CTTATTGGCCGAGAGATGAAAAATGATAGAATAAAAGTATCCCTCTCCATGAAGGTTGTCAATCAAGGGA
CTGGGAAAGACCTTGATCCCAACAATGTTATCATTGAGCAAGAAGAGAGGCGGAGGCGATCCTTCCAGGA
TTACACTGGGCAGAAGATCACCCTTGAGGCTGTCTTGAACACTACCTGCAAGAAGTGTGGCTGTAAAGGA
GAAGAAGAAAAAGAAACATAG

Translation (146 aa):
MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVK
LIGREMKNDRIKVSLSMKVVNQGTGKDLDPNNVIIEQEERRRRSFQDYTGQKITLEAVLNTTCKKCGCKG
EEEKET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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