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Report for CCDS73473.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73473.1 Public Homo sapiens 12 KRT78 24 110 108 CCDS HistoryNCBI Gene:196374Re-query CCDS DB by CCDS ID:73473.1Re-query CCDS DB by GeneID:196374See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73473.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359499.8 ENSP00000352479.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000359499.8Link to Ensembl Protein Viewer:ENSP00000352479.4Re-query CCDS DB by Nucleotide ID:ENST00000359499Re-query CCDS DB by Protein ID:ENSP00000352479
Original member Current member NCBI NM_001300814.1 NP_001287743.1 Accepted alive Link to Nucleotide Sequence:NM_001300814.1Link to Protein Sequence:NP_001287743.1Re-query CCDS DB by Nucleotide ID:NM_001300814Re-query CCDS DB by Protein ID:NP_001287743Link to BLAST:NP_001287743.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001287743.1 410 Q8N1N4-2 410 100% 0 0

Chromosomal Locations for CCDS 73473.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 52839113 52839372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52839453 52839487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52839764 52839984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52844093 52844218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52844559 52844723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52846197 52846292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52846764 52846824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52847907 52848121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52848218 52848271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1233 nt):
ATGGAAGGTCATGAGGCTTCCCCTGCCCAGGTTGGGCAGGGGGACAGGGGAAAGGTGCGGTTCCTGGAGC
AGCAGAACAAGGTCCTGGAGACGAAGTGGCATCTGCTGCAGCAACAGGGGTTGAGTGGCAGCCAGCAGGG
CCTGGAGCCTGTCTTTGAGGCCTGCCTGGATCAGCTCAGGAAGCAGCTGGAGCAGCTCCAGGGAGAACGA
GGGGCTCTGGATGCTGAGTTGAAGGCCTGCCGGGACCAGGAGGAGGAGTATAAGTCCAAGTATGAGGAGG
AGGCCCACAGGCGTGCCACACTTGAGAACGACTTTGTGGTCCTCAAGAAGGATGTGGATGGGGTTTTCCT
GAGCAAGATGGAGTTGGAGGGCAAGCTGGAGGCTCTGAGAGAGTACCTCTACTTCTTGAAGCATCTGAAT
GAAGAAGAGCTGGGCCAGCTCCAGACCCAGGCCAGCGACACGTCTGTGGTGCTGTCCATGGACAACAACC
GCTACCTGGACTTCAGCAGCATCATCACTGAGGTCCGCGCCCGGTACGAGGAGATCGCCCGGAGCAGCAA
GGCTGAGGCTGAGGCCTTGTACCAGACCAAGTACCAGGAACTTCAGGTGTCTGCCCAGCTTCATGGGGAC
AGGATGCAGGAAACGAAAGTCCAGATCTCTCAGCTACACCAAGAGATTCAGAGGCTGCAGAGTCAGACTG
AGAACCTCAAGAAGCAGAACGCCAGCCTGCAGGCCGCCATCACTGATGCTGAGCAGCGTGGGGAGCTGGC
CCTCAAGGACGCTCAGGCCAAGGTGGACGAGCTGGAGGCTGCTCTGAGGATGGCCAAGCAGAACCTGGCC
CGGCTGCTGTGCGAGTACCAGGAGCTGACGAGCACGAAGCTTTCCCTGGATGTGGAGATTGCCACTTACC
GCAGGCTGCTGGAGGGCGAGGAGTGCAGGATGTCTGGGGAGTGCACCAGCCAGGTCACTATCTCCTCGGT
GGGAGGCAGCGCTGTCATGTCTGGAGGAGTTGGTGGAGGCTTGGGGAGCACTTGTGGACTCGGTAGTGGG
AAAGGCAGCCCTGGGTCCTGCTGCACCAGCATTGTGACTGGAGGCTCCAACATCATTCTGGGCTCTGGGA
AGGACCCTGTTTTGGATTCCTGCTCTGTGTCTGGCTCCAGCGCTGGCTCCAGCTGCCACACCATCCTGAA
GAAGACAGTTGAGTCGAGTCTGAAGACATCCATCACCTACTGA

Translation (410 aa):
MEGHEASPAQVGQGDRGKVRFLEQQNKVLETKWHLLQQQGLSGSQQGLEPVFEACLDQLRKQLEQLQGER
GALDAELKACRDQEEEYKSKYEEEAHRRATLENDFVVLKKDVDGVFLSKMELEGKLEALREYLYFLKHLN
EEELGQLQTQASDTSVVLSMDNNRYLDFSSIITEVRARYEEIARSSKAEAEALYQTKYQELQVSAQLHGD
RMQETKVQISQLHQEIQRLQSQTENLKKQNASLQAAITDAEQRGELALKDAQAKVDELEAALRMAKQNLA
RLLCEYQELTSTKLSLDVEIATYRRLLEGEECRMSGECTSQVTISSVGGSAVMSGGVGGGLGSTCGLGSG
KGSPGSCCTSIVTGGSNIILGSGKDPVLDSCSVSGSSAGSSCHTILKKTVESSLKTSITY


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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