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Report for CCDS73831.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73831.1 Public Homo sapiens 16 PDXDC1 22 109 92 CCDS HistoryNCBI Gene:23042Re-query CCDS DB by CCDS ID:73831.1Re-query CCDS DB by GeneID:23042See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73831.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000455313.6 ENSP00000406703.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000455313.6Link to Ensembl Protein Viewer:ENSP00000406703.2Re-query CCDS DB by Nucleotide ID:ENST00000455313Re-query CCDS DB by Protein ID:ENSP00000406703
Original member NCBI NM_001285450.1 NP_001272379.1 Updated not alive Link to Nucleotide Sequence:NM_001285450.1Link to Protein Sequence:NP_001272379.1Re-query CCDS DB by Nucleotide ID:NM_001285450Re-query CCDS DB by Protein ID:NP_001272379
Current member NCBI NM_001285450.2 NP_001272379.1 Accepted alive Link to Nucleotide Sequence:NM_001285450.2Link to Protein Sequence:NP_001272379.1Re-query CCDS DB by Nucleotide ID:NM_001285450Re-query CCDS DB by Protein ID:NP_001272379Link to BLAST:NP_001272379.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001272379.1 429 Q6P996-2 429 100% 0 0

Chromosomal Locations for CCDS 73831.1

Assembly GRCh38.p12 (GCF_000001405.38)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 14975200 14975220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14997753 14997826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14998340 14998405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15001776 15001856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15004187 15004333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15006394 15006583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15009681 15009759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15016129 15016213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15017120 15017168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15017321 15017422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15018840 15018965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15022704 15022754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15026643 15026706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15028878 15029032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1290 nt):
ATGGACGCGTCCCTGGAGAAGATAGCAGACCCCACGTTAGCTGAAATGGGAAAAAACTTGAAGGAGGCAG
TG
AAGATGCTGGAGGACAGTCAGAGAAGAACAGAAGAGGAAAATGGAAAGAAGCTCATATCCGGAGATAT
T
CCAGGCCCACTCCAGGGCAGTGGGCAAGATATGGTGAGCATCCTCCAGTTAGTTCAGAATCTCATGCAT
GGA
GATGAAGATGAGGAGCCCCAGAGCCCCAGAATCCAAAATATTGGAGAACAAGGTCATATGGCTTTGT
TG
GGACATAGTCTGGGAGCTTATATTTCAACTCTGGACAAAGAGAAGCTGAGAAAACTTACAACTAGGAT
A
CTTTCAGATACCACCTTATGGCTATGCAGAATTTTCAGATATGAAAATGGGTGTGCTTATTTCCACGAA
GAG
GAAAGAGAAGGACTTGCAAAGATATGTAGGCTTGCCATTCATTCTCGATATGAAGACTTCGTAGTGG
AT
GGCTTCAATGTGTTATATAACAAGAAGCCTGTCATATATCTTAGTGCTGCTGCTAGACCTGGCCTGGG
C
CAATACCTTTGTAATCAGGATGTTGCCTTCCTGGAGAAACTGATTAAAGATGATATAGAGCGAGGAAGA
CTG
CCCCTGTTGCTTGTCGCAAATGCAGGAACGGCAGCAGTAGGACACACAGACAAGATTGGGAGATTGA
AA
GAACTCTGTGAGCAGTATGGCATATGGCTTCATGTGGAGGGTGTGAATCTGGCAACATTGGCTCTGGG
T
TATGTCTCCTCATCAGTGCTGGCTGCAGCCAAATGTGATAGCATGACGATGACTCCTGGCCCGTGGCTG
GGT
TTGCCAGCTGTTCCTGCGGTGACACTGTATAAACACGATGACCCTGCCTTGACTTTAGTTGCTGGTC
TT
ACATCAAATAAGCCCACAGACAAACTCCGTGCCCTGCCTCTGTGGTTATCTTTACAATACTTGGGACT
T
GATGGGTTTGTGGAGAGGATCAAGCATGCCTGTCAACTGAGTCAACGGTTGCAGGAAAGTTTGAAGAAA
GTG
AATTACATCAAAATCTTGGTGGAAGATGAGCTCAGCTCCCCAGTGGTGGTGTTCAGATTTTTCCAGG
AA
TTACCAGGCTCAGATCCGGTGTTTAAAGCCGTCCCAGTGCCCAACATGACACCTTCAGGAGTCGGCCG
G
GAGAGGCACTCGTGTGACGCGCTGAATCGCTGGGTGAGAATGGCAGTCACCCCCCTTTCCTTTCAGGTC
CCC
GTCCATCACCATCCGACCTGCTGGTGA


Translation (429 aa):
MDASLEKIADPTLAEMGKNLKEAVKMLEDSQRRTEEENGKKLISGDIPGPLQGSGQDMVSILQLVQNLMH
G
DEDEEPQSP
RIQNIGEQGHMALLGHSLGAYISTLDKEKLRKLTTRILSDTTLWLCRIFRYENGCAYFHE
E
EREGLAKICRLAIHSRYEDFVVDGFNVLYNKKPVIYLSAAARPGLGQYLCNQ
DVAFLEKLIKDDIERGR
L
PLLLVANA
GTAAVGHTDKIGRLKELCEQYGIWLHVEGVNLATLALGYVSSSVLAAAKCDSMTMTPGPWL
G
LPAVPAVTLYKHDDPAL
TLVAGLTSNKPTDKLRALPLWLSLQYLGLDGFVERIKHACQLSQRLQESLKK
V
NYIKIL
VEDELSSPVVVFRFFQELPGSDPVFKAVPVPNMTPSGVGRERHSCDALNRWVRMAVTPLSFQV
P
VHHHPTCW




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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