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Report for CCDS76897.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
76897.1 Public Homo sapiens 16 NPIPB15 24 110 108 CCDS HistoryNCBI Gene:440348Re-query CCDS DB by CCDS ID:76897.1Re-query CCDS DB by GeneID:440348See the combined annotation on chromosome 16 in Sequence Viewer

Public Note for CCDS 76897.1
This gene lacks full-length transcript support, and thus the exon combination of this CCDS representation is inferred based on paralogous transcript alignments and RNA-seq data.

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 76897.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000429990.1 ENSP00000411140.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000429990.1Link to Ensembl Protein Viewer:ENSP00000411140.1Re-query CCDS DB by Nucleotide ID:ENST00000429990Re-query CCDS DB by Protein ID:ENSP00000411140
Original member Current member EBI ENST00000692376.1 ENSP00000508772.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000692376.1Link to Ensembl Protein Viewer:ENSP00000508772.1Re-query CCDS DB by Nucleotide ID:ENST00000692376Re-query CCDS DB by Protein ID:ENSP00000508772
Original member Current member NCBI NM_001306094.2 NP_001293023.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001306094.2Link to Protein Sequence:NP_001293023.1Re-query CCDS DB by Nucleotide ID:NM_001306094Re-query CCDS DB by Protein ID:NP_001293023Link to BLAST:NP_001293023.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001293023.1 443 A6NHN6 443 100% 0 0

Chromosomal Locations for CCDS 76897.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 74377974 74378039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 74381516 74381698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 74385342 74385441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 74385554 74385749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 74389825 74389885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 74389995 74390030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 74391391 74392080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1332 nt):
ATGCGGCTGCGCTTTTGGCTCCTCATTTGGCTCCTGCTGGGATTTATCAGCCATCAGCCCACCCCTGTCA
TCAATAGTCTGGCTGTCTATCGTCATCGTGAGACTGACTTTGGTGTAGGAGTTCGAGACCACCCTGGCCA
ACATGGCAAAACCCCATCTCCACAAAAATTGGATAATTTGATAATTATCATTATTGGGTTTCTGAGACGT
GACACATTTACCATTCTCTTCTGCACAAGTTACCTTTGTGTGTCTTTCCTGAAGACTATCTTCTGGTCTC
GAAATGGACATGATGGATCCACGGATGTACAGCAGAGAGCCTGGAGGTCCAACCGCAGTAGACAGAAAGG
GCTGAGGTCCATTTGTATGCACACAAAGAAAAGAGTTTCTTCCTTTCGAGGAAATAAAATTGGCCTGAAA
GACGTCATTACTCTACGGAGGCATGTGGAAACAAAAGTTAGAGCTAAAATCCGTAAGAGGAAGGTGACAA
CGAAAATCAACCGTCATGACAAAATCAATGGAAAGAGGAAGACCGCCAGAAAACAGAAAATGTTTCAACG
TGCGCAAGAGTTGCGGCGGCGGGCAGAGGACTACCACAAATGCAAAATCCCCCCTTCTGCAAGAAAGCCT
CTTTGCAACTGGGTCAGAATGGCGGCAGCGGAGCATCGTCATTCTTCAGGATTGCCCTGCTGGCCCTACC
TCACAGCTGAAGCTTTAAAAAACAGGATGGGCCGCCAGCCACCTCCTCCAACTCAACAACATTCTATAAC
TGATAACTCCCTGAGCCTCAAGACACCTCCCGAATGTCTCCTTCATCCCCTTCCACCCTCAGTGGATGAT
AATATCAAGGAGTGTCCTCTTGCTCCTCTTCCACCCTCAGTGGATGATAATCTGAAGGAGTATCTCCTGG
TCCCTCTTCCACCCTCTCCTCTTCCACCCTCAGTGGATGATAATCTGAAGGACTGTCTCTTTGTCCCTCT
TCCACCCTCTCCTCTTCCACCCTCAGTGGATGATAATCTCAAGACTCCTCCCTTAGCTACTCAGGAGGCC
GAGGCGGAAAAACCACCCAAACCCAAGAGGTGGAGGGTGGATGAGGTGGAACAATCACCGAAACCCAAGA
GGCGGAGGGCGGATGAGGTGGAACAATCGCCCAAGCCCAAGAGGCAGAGGGAGGCCGAGGCACAACAATT
ACCCAAACCCAAGAGGCGGAGGTTGAGTAAGCTGAGAACACGCCATTGCACTCAAGCCTGGGCAATAAGA
ATAAATCCGTGGGTCGAAAAAAAGAAAAAAATCAAAAAACAAAACAAAACCCACGCTCCAAAAACAAACT
AA

Translation (443 aa):
MRLRFWLLIWLLLGFISHQPTPVINSLAVYRHRETDFGVGVRDHPGQHGKTPSPQKLDNLIIIIIGFLRR
DTFTILFCTSYLCVSFLKTIFWSRNGHDGSTDVQQRAWRSNRSRQKGLRSICMHTKKRVSSFRGNKIGLK
DVITLRRHVETKVRAKIRKRKVTTKINRHDKINGKRKTARKQKMFQRAQELRRRAEDYHKCKIPPSARKP
LCNWVRMAAAEHRHSSGLPCWPYLTAEALKNRMGRQPPPPTQQHSITDNSLSLKTPPECLLHPLPPSVDD
NIKECPLAPLPPSVDDNLKEYLLVPLPPSPLPPSVDDNLKDCLFVPLPPSPLPPSVDDNLKTPPLATQEA
EAEKPPKPKRWRVDEVEQSPKPKRRRADEVEQSPKPKRQREAEAQQLPKPKRRRLSKLRTRHCTQAWAIR
INPWVEKKKKIKKQNKTHAPKTN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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