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Report for CCDS77402.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77402.1 Public Homo sapiens 2 ATL2 24 110 108 CCDS HistoryNCBI Gene:64225Re-query CCDS DB by CCDS ID:77402.1Re-query CCDS DB by GeneID:64225See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 77402.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000452935.6 ENSP00000390743.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000452935.6Link to Ensembl Protein Viewer:ENSP00000390743.2Re-query CCDS DB by Nucleotide ID:ENST00000452935Re-query CCDS DB by Protein ID:ENSP00000390743
Original member Current member NCBI NM_001308076.1 NP_001295005.1 Accepted alive Link to Nucleotide Sequence:NM_001308076.1Link to Protein Sequence:NP_001295005.1Re-query CCDS DB by Nucleotide ID:NM_001308076Re-query CCDS DB by Protein ID:NP_001295005Link to BLAST:NP_001295005.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001295005.1 565 Q8NHH9-5 565 100% 0 0

Chromosomal Locations for CCDS 77402.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 38295994 38296113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38298144 38298575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38299256 38299327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38300272 38300328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38309379 38309506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38310309 38310447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38313151 38313243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38314608 38314664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38315284 38315334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38318535 38318639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38318885 38319019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38343268 38343512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38376116 38376179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1698 nt):
ATGGTACTTAAGAAAGGCATAAAGTTTTTTCAAAGGCTTATAAATAGTAAAAGCCTACGATTTGGTGAGA
ATTATGAAGATGATGACCTAGTAAATTCTGATGAGGTTATGAAGAAACCATGTCCAGTACAGATTGTTCT
TGCTCATGAAGATGACCATAACTTTGAACTTGATGAAGAAGCTTTGGAGCAGATATTGCTACAGGAGCAC
ATACGAGATCTTAACATAGTAGTGGTATCTGTGGCAGGAGCTTTTCGTAAAGGGAAGTCATTTCTACTGG
ACTTCATGCTTAGATACATGTATAACAAGGATTCTCAAAGTTGGATTGGTGGAAACAATGAACCATTGAC
AGGCTTTACATGGCGAGGTGGCTGTGAAAGAGAAACAACAGGCATACAAGTTTGGAATGAAGTATTTGTG
ATTGACAGACCTAATGGAACTAAAGTTGCTGTGCTGCTTATGGATACCCAGGGTGCCTTTGATAGCCAGT
CAACTATCAAAGACTGTGCAACGGTGTTTGCTCTGAGCACTATGACTAGCTCTGTCCAGGTATATAATCT
GTCTCAGAATATTCAAGAAGATGATCTTCAACATTTGCAATTATTTACAGAGTATGGAAGACTTGCGATG
GAAGAAATCTACCAGAAACCATTTCAGACATTAATGTTTTTGATTCGAGATTGGAGCTATCCTTATGAAC
ATTCATATGGTTTGGAAGGTGGAAAGCAATTTCTTGAAAAGAGATTACAGGTAAAACAAAATCAACATGA
AGAGCTTCAGAATGTAAGGAAGCACATACACAATTGTTTCTCAAATCTTGGTTGCTTCCTTTTGCCACAT
CCTGGTCTTAAAGTTGCAACTAATCCTAGTTTTGATGGGAGATTGAAAGATATTGATGAAGACTTTAAAC
GAGAGCTTCGAAATCTGGTTCCATTGCTGCTTGCCCCTGAAAATTTGGTAGAAAAAGAGATAAGTGGATC
TAAAGTCACTTGTAGAGATCTTGTAGAATATTTTAAGGCTTACATCAAAATCTATCAAGGAGAAGAACTT
CCACATCCAAAGTCCATGCTTCAGGCAACAGCTGAAGCTAATAATCTTGCTGCAGTAGCAGGAGCAAGAG
ATACCTATTGTAAAAGTATGGAACAGGTATGTGGAGGGGACAAGCCTTACATTGCACCTTCAGATCTGGA
GCGAAAACACTTGGATCTCAAGGAAGTGGCGATAAAACAATTTCGTTCAGTAAAAAAGATGGGTGGAGAT
GAGTTCTGCCGTCGTTATCAGGACCAGCTTGAAGCTGAAATTGAAGAAACCTATGCAAATTTTATAAAGC
ACAATGATGGCAAAAATATCTTCTATGCTGCTCGTACCCCAGCCACACTGTTTGCGGTCATGTTTGCTAT
GTATATAATCTCAGGACTGACTGGCTTCATTGGCCTAAACTCTATAGCTGTCTTGTGTAACCTTGTCATG
GGGTTAGCACTGATATTTCTTTGTACTTGGGCATATGTTAAATACTCTGGGGAGTTCAGAGAAATTGGAA
CAGTGATTGATCAGATTGCTGAAACACTATGGGAACAGGTATTGAAGCCCCTGGGTGATAATTTGATGGA
GGAAAACATAAGGCAGTCTGTAACAAACTCTATCAAAGCAGGCCTGACTGACCAGGTGTCTCATCATGCC
AGATTAAAGACAGACTGA

Translation (565 aa):
MVLKKGIKFFQRLINSKSLRFGENYEDDDLVNSDEVMKKPCPVQIVLAHEDDHNFELDEEALEQILLQEH
IRDLNIVVVSVAGAFRKGKSFLLDFMLRYMYNKDSQSWIGGNNEPLTGFTWRGGCERETTGIQVWNEVFV
IDRPNGTKVAVLLMDTQGAFDSQSTIKDCATVFALSTMTSSVQVYNLSQNIQEDDLQHLQLFTEYGRLAM
EEIYQKPFQTLMFLIRDWSYPYEHSYGLEGGKQFLEKRLQVKQNQHEELQNVRKHIHNCFSNLGCFLLPH
PGLKVATNPSFDGRLKDIDEDFKRELRNLVPLLLAPENLVEKEISGSKVTCRDLVEYFKAYIKIYQGEEL
PHPKSMLQATAEANNLAAVAGARDTYCKSMEQVCGGDKPYIAPSDLERKHLDLKEVAIKQFRSVKKMGGD
EFCRRYQDQLEAEIEETYANFIKHNDGKNIFYAARTPATLFAVMFAMYIISGLTGFIGLNSIAVLCNLVM
GLALIFLCTWAYVKYSGEFREIGTVIDQIAETLWEQVLKPLGDNLMEENIRQSVTNSIKAGLTDQVSHHA
RLKTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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