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Report for CCDS7787.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7787.1 Public Homo sapiens 11 TUB 24 110 108 CCDS HistoryNCBI Gene:7275Re-query CCDS DB by CCDS ID:7787.1Re-query CCDS DB by GeneID:7275See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7787.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000299506.3 ENSP00000299506.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000299506.3Link to Ensembl Protein Viewer:ENSP00000299506.3Re-query CCDS DB by Nucleotide ID:ENST00000299506Re-query CCDS DB by Protein ID:ENSP00000299506
Original member Current member NCBI NM_177972.3 NP_813977.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_177972.3Link to Protein Sequence:NP_813977.1Re-query CCDS DB by Nucleotide ID:NM_177972Re-query CCDS DB by Protein ID:NP_813977Link to BLAST:NP_813977.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_813977.1 506 P50607-1 506 100% 0 0

Chromosomal Locations for CCDS 7787.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 8081511 8081548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 8089610 8089661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 8090069 8090231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 8094046 8094189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 8095498 8095665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 8096685 8096806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 8097228 8097425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 8097714 8097826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 8098758 8098875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 8100503 8100601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 8100826 8100997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 8101486 8101619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1521 nt):
ATGACTTCCAAGCCGCATTCCGACTGGATTCCCTACAGTGTCTTAGATGATGAGGGCAGAAACCTGAGGC
AGCAGAAGCTTGATCGGCAGCGGGCCCTGCTGGAGCAGAAGCAGAAGAAGAAGCGCCAGGAGCCCCTGAT
GGTGCAGGCCAATGCAGATGGGCGGCCCCGGAGCCGGCGGGCCCGGCAGTCAGAGGAACAAGCCCCCCTG
GTGGAGTCCTACCTCAGCAGCAGTGGCAGCACCAGCTACCAAGTTCAAGAGGCCGACTCACTCGCCAGTG
TGCAGCTGGGAGCCACGCGCCCAACAGCACCAGCTTCAGCCAAGAGAACCAAGGCGGCAGCTACAGCAGG
GGGCCAGGGTGGCGCCGCTAGGAAGGAGAAGAAGGGAAAGCACAAAGGCACCAGCGGGCCAGCAGCACTG
GCAGAAGACAAGTCTGAGGCCCAAGGCCCAGTGCAGATTCTGACTGTGGGCCAGTCAGACCACGCCCAGG
ACGCAGGGGAGACGGCAGCTGGTGGGGGCGAACGGCCCAGCGGGCAGGATCTCCGTGCCACGATGCAGAG
GAAGGGCATCTCCAGCAGCATGAGCTTTGACGAGGATGAGGAGGATGAGGAGGAGAATAGCTCCAGCTCC
TCCCAGCTAAATAGTAACACCCGCCCCAGCTCTGCTACTAGCAGGAAGTCCGTCAGGGAGGCAGCCTCAG
CCCCTAGCCCAACAGCTCCAGAGCAACCAGTGGACGTTGAGGTCCAGGATCTTGAGGAGTTTGCACTGAG
GCCGGCCCCCCAGGGTATCACCATCAAATGCCGCATCACTCGGGACAAGAAAGGGATGGACCGGGGCATG
TACCCCACCTACTTTCTGCACCTGGACCGTGAGGATGGGAAGAAGGTGTTCCTCCTGGCGGGAAGGAAGA
GAAAGAAGAGTAAAACTTCCAATTACCTCATCTCTGTGGACCCAACAGACTTGTCTCGAGGAGGGGACAG
CTATATCGGGAAACTGCGGTCCAACTTGATGGGCACCAAGTTCACTGTTTATGACAATGGAGTCAACCCT
CAGAAGGCCTCATCCTCCACTTTGGAAAGTGGAACCTTACGTCAGGAGCTGGCAGCTGTGTGCTACGAGA
CAAACGTCTTAGGCTTCAAGGGGCCTCGGAAGATGAGCGTGATTGTCCCAGGCATGAACATGGTTCATGA
GAGAGTCTCTATCCGCCCCCGCAACGAGCATGAGACACTGCTAGCACGCTGGCAGAATAAGAACACGGAG
AGTATCATCGAGCTGCAAAACAAGACACCTGTCTGGAATGATGACACACAGTCCTATGTACTCAACTTCC
ATGGGCGCGTCACACAGGCCTCCGTGAAGAACTTCCAGATCATCCATGGCAATGACCCGGACTACATCGT
GATGCAGTTTGGCCGGGTAGCAGAGGATGTGTTCACCATGGATTACAACTACCCGCTGTGTGCACTGCAG
GCCTTTGCCATTGCCCTGTCCAGCTTCGACAGCAAGCTGGCGTGCGAGTAG

Translation (506 aa):
MTSKPHSDWIPYSVLDDEGRNLRQQKLDRQRALLEQKQKKKRQEPLMVQANADGRPRSRRARQSEEQAPL
VESYLSSSGSTSYQVQEADSLASVQLGATRPTAPASAKRTKAAATAGGQGGAARKEKKGKHKGTSGPAAL
AEDKSEAQGPVQILTVGQSDHAQDAGETAAGGGERPSGQDLRATMQRKGISSSMSFDEDEEDEEENSSSS
SQLNSNTRPSSATSRKSVREAASAPSPTAPEQPVDVEVQDLEEFALRPAPQGITIKCRITRDKKGMDRGM
YPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNP
QKASSSTLESGTLRQELAAVCYETNVLGFKGPRKMSVIVPGMNMVHERVSIRPRNEHETLLARWQNKNTE
SIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHGNDPDYIVMQFGRVAEDVFTMDYNYPLCALQ
AFAIALSSFDSKLACE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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