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Report for CCDS78613.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78613.1 Public Mus musculus 1 Igfbp2 23 108 98 CCDS HistoryNCBI Gene:16008Re-query CCDS DB by CCDS ID:78613.1Re-query CCDS DB by GeneID:16008See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78613.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000120564.1 ENSMUSP00000112706.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120564.1Link to Ensembl Protein Viewer:ENSMUSP00000112706.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120564Re-query CCDS DB by Protein ID:ENSMUSP00000112706
Original member NCBI NM_001310659.1 NP_001297588.1 Updated not alive Link to Nucleotide Sequence:NM_001310659.1Link to Protein Sequence:NP_001297588.1Re-query CCDS DB by Nucleotide ID:NM_001310659Re-query CCDS DB by Protein ID:NP_001297588
Current member NCBI NM_001310659.2 NP_001297588.1 Accepted alive Link to Nucleotide Sequence:NM_001310659.2Link to Protein Sequence:NP_001297588.1Re-query CCDS DB by Nucleotide ID:NM_001310659Re-query CCDS DB by Protein ID:NP_001297588Link to BLAST:NP_001297588.1

Chromosomal Locations for CCDS 78613.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 72849142 72849312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72849564 72849704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72851998 72852162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (477 nt):
ATGAACATGTTGGGAGGTGGTAGCAGTGCTGGCCGGAAGCCCCTCAAGTCAGGCATGAAGGAGCTGGCTG
TGTTCCGGGAGAAGGTCAATGAACAGCACCGGCAGATGGGCAAGGGTGCCAAACACCTCAGTCTGGAGGA
GCCCAAGAAGTTGCGCCCGCCTCCCGCCAGGACCCCTTGCCAGCAGGAGTTGGACCAGGTCCTGGAGCGG
ATCTCCACCATGCGCCTTCCGGATGATCGGGGCCCCCTGGAACATCTCTACTCCCTGCACATCCCCAACT
GTGACAAGCATGGCCGGTACAACCTTAAGCAGTGCAAGATGTCTCTGAACGGACAGCGCGGGGAGTGCTG
GTGTGTGAACCCCAATACCGGGAAGCCCATCCAGGGAGCTCCCACCATCCGGGGAGACCCCGAGTGCCAT
CTCTTCTACAACGAGCAGCAGGAGACTGGTGGGGCCCATGCCCAAAGTGTGCAGTAA

Translation (158 aa):
MNMLGGGSSAGRKPLKSGMKELAVFREKVNEQHRQMGKGAKHLSLEEPKKLRPPPARTPCQQELDQVLER
ISTMRLPDDRGPLEHLYSLHIPNCDKHGRYNLKQCKMSLNGQRGECWCVNPNTGKPIQGAPTIRGDPECH
LFYNEQQETGGAHAQSVQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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