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Report for CCDS78788.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78788.1 Public Mus musculus 10 Oprm1 23 108 98 CCDS HistoryNCBI Gene:18390Re-query CCDS DB by CCDS ID:78788.1Re-query CCDS DB by GeneID:18390See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78788.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052751.13 ENSMUSP00000060329.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052751.13Link to Ensembl Protein Viewer:ENSMUSP00000060329.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000052751Re-query CCDS DB by Protein ID:ENSMUSP00000060329
Original member Current member NCBI NM_001304950.1 NP_001291879.1 Accepted alive Link to Nucleotide Sequence:NM_001304950.1Link to Protein Sequence:NP_001291879.1Re-query CCDS DB by Nucleotide ID:NM_001304950Re-query CCDS DB by Protein ID:NP_001291879Link to BLAST:NP_001291879.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001291879.1 393 P42866-9 393 100% 0 0

Chromosomal Locations for CCDS 78788.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 6788875 6789158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 6828885 6829237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 6829977 6830497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7014041 7014064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1182 nt):
ATGGACAGCAGCGCCGGCCCAGGGAACATCAGCGACTGCTCTGACCCCTTAGCTCCTGCAAGTTGCTCCC
CAGCACCTGGCTCCTGGCTCAACTTGTCCCACGTTGATGGCAACCAGTCCGACCCATGCGGTCCTAACCG
CACGGGGCTTGGCGGGAGCCACAGCCTGTGCCCTCAGACCGGCAGCCCTTCCATGGTCACAGCCATCACC
ATCATGGCCCTCTATTCTATCGTGTGTGTAGTGGGCCTCTTTGGAAACTTCCTGGTCATGTATGTGATTG
TAAGATATACCAAAATGAAGACTGCCACCAACATCTACATTTTCAACCTTGCTCTGGCAGATGCCTTAGC
CACTAGCACGCTGCCCTTTCAGAGTGTTAACTACCTGATGGGAACGTGGCCCTTTGGAAACATCCTCTGC
AAGATCGTGATCTCAATAGACTACTACAACATGTTCACCAGTATCTTCACCCTCTGCACCATGAGTGTAG
ACCGCTACATTGCCGTCTGCCACCCGGTCAAGGCCCTGGATTTCCGTACCCCCCGAAATGCCAAAATTGT
CAATGTCTGCAACTGGATCCTCTCTTCTGCCATTGGTCTGCCCGTAATGTTCATGGCAACCACAAAATAC
AGGCAGGGGTCCATAGATTGCACCCTCACGTTCTCTCATCCCACATGGTACTGGGAGAACCTGCTCAAAA
TCTGTGTCTTCATCTTCGCCTTCATCATGCCGGTCCTCATCATCACTGTGTGTTATGGACTGATGATCTT
ACGACTCAAGAGTGTCCGCATGCTGTCGGGCTCCAAAGAAAAGGACAGGAACCTGCGCAGGATCACCCGG
ATGGTGCTGGTGGTCGTGGCTGTATTTATTGTCTGCTGGACCCCCATCCACATCTATGTCATCATCAAAG
CACTGATCACGATTCCAGAAACCACTTTCCAGACTGTTTCCTGGCACTTCTGCATTGCCTTGGGTTACAC
AAACAGCTGCCTGAACCCAGTTCTTTATGCGTTCCTGGATGAAAACTTCAAACGATGTTTTAGAGAGTTC
TGCATCCCAACTTCCTCCACAATCGAACAGCAAAACTCTGCTCGAATCCGTCAAAACACTAGGGAACACC
CCTCCACGGCTAATACAGTGGATCGAACTAACCACCAGAGGAATGAGGAACCTTCTTCCTGA

Translation (393 aa):
MDSSAGPGNISDCSDPLAPASCSPAPGSWLNLSHVDGNQSDPCGPNRTGLGGSHSLCPQTGSPSMVTAIT
IMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATSTLPFQSVNYLMGTWPFGNILC
KIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPVMFMATTKY
RQGSIDCTLTFSHPTWYWENLLKICVFIFAFIMPVLIITVCYGLMILRLKSVRMLSGSKEKDRNLRRITR
MVLVVVAVFIVCWTPIHIYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFREF
CIPTSSTIEQQNSARIRQNTREHPSTANTVDRTNHQRNEEPSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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