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Report for CCDS79692.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79692.1 Public Mus musculus 19 Ms4a4a 23 108 98 CCDS HistoryNCBI Gene:666907Re-query CCDS DB by CCDS ID:79692.1Re-query CCDS DB by GeneID:666907See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 79692.1
This gene lacks full-length transcript support, and therefore this CCDS representation has an inferred exon combination based on partial transcript, RNA-seq alignments and orthologous data.

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 79692.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000188995.1 ENSMUSP00000140768.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000188995.1Link to Ensembl Protein Viewer:ENSMUSP00000140768.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000188995Re-query CCDS DB by Protein ID:ENSMUSP00000140768
Original member Current member NCBI NM_001310331.1 NP_001297260.1 Accepted alive Link to Nucleotide Sequence:NM_001310331.1Link to Protein Sequence:NP_001297260.1Re-query CCDS DB by Nucleotide ID:NM_001310331Re-query CCDS DB by Protein ID:NP_001297260Link to BLAST:NP_001297260.1

Chromosomal Locations for CCDS 79692.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 11378753 11378896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11381324 11381452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11386383 11386439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11388231 11388389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11390261 11390362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11392671 11392790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (711 nt):
ATGTTAGTCATACAAGGAACAGAACAGAGTGCATTGGAAGCTGGCTATGGGGCACAGCAGAATGGACAAC
CTTTATATGTGAATTCGCATTCATGGAAAAGAATGACAGAGAAGTTCTTGAAGGGAGAACCCAAAATCCT
TGGGATTGTGCAGATTGTAATCGCCATCATGAACCTCAGCATAGGAATTATGATGATAATTGCCACTGTG
TCGACCGGTGAAATACCCCCTTCTTCAGTGTACATAGGATACCCAATTTGGGGGTCCCTAATGTTTATTA
TTTCAGGATCATTTTCAATTGTAGCAGGAAGAAGAACTACAAAAGGTTTGGTTCGAAGCAGCCTAGGCTT
GAACATTACCAGCTCCGTGTTTGCCTTCTCGGGGATCGTAATCAGCTCACTGAGCCCAGGCATTTATTCT
TTCCATGTATATTACTGTACATATAGAGGTTCATCAGAAGGCTGTCACATGACCTTGTCCATTTTAATGG
GTCTGGATATTGTGGTAGTCGTTTTAAGTGTGCTGGAATTCTGCATAGGAGTATCCCTCTCTGCCTTTGG
ATGCAGGGTGATGTGTTGTAACCCTGGTGGGGTCATGATAATTATGCCATCAAATCCTACCAAGGCAGAG
ACAGCAAATCCTGTAACACTTCAAAGTGGATTGATGCCACCAGAACACCAAGAGAGAAATGTTCCAGAAA
ATATGCACTGA

Translation (236 aa):
MLVIQGTEQSALEAGYGAQQNGQPLYVNSHSWKRMTEKFLKGEPKILGIVQIVIAIMNLSIGIMMIIATV
STGEIPPSSVYIGYPIWGSLMFIISGSFSIVAGRRTTKGLVRSSLGLNITSSVFAFSGIVISSLSPGIYS
FHVYYCTYRGSSEGCHMTLSILMGLDIVVVVLSVLEFCIGVSLSAFGCRVMCCNPGGVMIIMPSNPTKAE
TANPVTLQSGLMPPEHQERNVPENMH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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