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Report for CCDS79835.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79835.1 Public Mus musculus 2 Bmf 23 108 98 CCDS HistoryNCBI Gene:171543Re-query CCDS DB by CCDS ID:79835.1Re-query CCDS DB by GeneID:171543See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79835.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110859.2 ENSMUSP00000106483.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110859.2Link to Ensembl Protein Viewer:ENSMUSP00000106483.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110859Re-query CCDS DB by Protein ID:ENSMUSP00000106483
Original member NCBI NM_001311140.2 NP_001298069.1 Updated not alive Link to Nucleotide Sequence:NM_001311140.2Link to Protein Sequence:NP_001298069.1Re-query CCDS DB by Nucleotide ID:NM_001311140Re-query CCDS DB by Protein ID:NP_001298069
Current member NCBI NM_001311140.3 NP_001298069.1 Accepted alive Link to Nucleotide Sequence:NM_001311140.3Link to Protein Sequence:NP_001298069.1Re-query CCDS DB by Nucleotide ID:NM_001311140Re-query CCDS DB by Protein ID:NP_001298069Link to BLAST:NP_001298069.1

Chromosomal Locations for CCDS 79835.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 118532558 118532659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118545082 118545245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118546716 118547012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118547371 118547380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (573 nt):
ATGTCCCCAGGAGAGATGGAGCCACCTCAGTGTGTGGAGGAGCTAGAAGATGATGTGTTCCAGTCAGAGG
ATGGGGAGCCAGGGACACAGCCTGGGGGCTTGCTCTCTGCTGACCTGTTTGCCCAGAGCCAGCTGGACTG
TCCCCTCAGTCGACTCCAGCTCTTCCCTCTCACCCATTGCTGTGGTCCCGGACTCCGGCCCATAAGCCAG
GAAGACAAGGCCACTCAGACCCTCAGTCCAGCTTCCCCAAGCCAGGGTGTCATGCTGCCTTGTGGGGTGA
CAGAGGAACCCCAGAGACTCTTTTACGGCAACGCTGGCTACAGGCTTCCTCTCCCTGCCAGTTTCCCTGC
AGGCTCACCCCTTGGGGAGCAGCCCCCTGAAGGACAGTTCCTTCAGCACCGAGCAGAGGTGCAGATCGCC
AGAAAGCTTCAGTGTATTGCAGACCAGTTCCATCGGCTTCATACGCAACAACACCAGCAGAACCGAGACC
GTGCGTGGTGGCAGGTCTTCCTTTTCCTTCAAAACCTCGCCCTGAACAGACAAGAAAACAGGGAAGGGGT
GGGGCCCTGGTGA

Translation (190 aa):
MSPGEMEPPQCVEELEDDVFQSEDGEPGTQPGGLLSADLFAQSQLDCPLSRLQLFPLTHCCGPGLRPISQ
EDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAGSPLGEQPPEGQFLQHRAEVQIA
RKLQCIADQFHRLHTQQHQQNRDRAWWQVFLFLQNLALNRQENREGVGPW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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