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Report for CCDS79895.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79895.1 Public Mus musculus 3 Ttc14 23 108 98 CCDS HistoryNCBI Gene:67120Re-query CCDS DB by CCDS ID:79895.1Re-query CCDS DB by GeneID:67120See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79895.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000200271.4 ENSMUSP00000143738.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000200271.4Link to Ensembl Protein Viewer:ENSMUSP00000143738.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000200271Re-query CCDS DB by Protein ID:ENSMUSP00000143738
Original member NCBI NM_001290502.1 NP_001277431.1 Updated not alive Link to Nucleotide Sequence:NM_001290502.1Link to Protein Sequence:NP_001277431.1Re-query CCDS DB by Nucleotide ID:NM_001290502Re-query CCDS DB by Protein ID:NP_001277431
Current member NCBI NM_001290502.2 NP_001277431.1 Accepted alive Link to Nucleotide Sequence:NM_001290502.2Link to Protein Sequence:NP_001277431.1Re-query CCDS DB by Nucleotide ID:NM_001290502Re-query CCDS DB by Protein ID:NP_001277431Link to BLAST:NP_001277431.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277431.1 435 Q9CSP9-3 435 99.7701% 0 1

Chromosomal Locations for CCDS 79895.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 33800526 33800674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33800956 33801080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33801191 33801390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33802859 33802943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33803075 33803204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33803450 33803605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33804000 33804071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33804421 33804540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33804640 33804762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33806816 33806963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1308 nt):
ATGGCCGGGATGCGCCTTCCGAGCCGCCGCCAAAGCTTCCCTGCTCCCGTTTCCAGAGAGAACGGGCTTA
AAACTTCTTCCGGAACTCAGTGGGTAAAGTCACTTTCCATCGAGCGGCCTGACCTGACCGATTCCCAGGC
TTCGCAAGGGAAAGAGAAGAGAGTTGACAACATTGAAATACAAAAATTCATCTCTAAAAAAGCGGATCTG
CTTTTTGCACTGTCTTGGAAATCAGACGCATCTCCACCCTCTGAAGTGCATGACGACAATGACAATCTTT
ATGCGGTCATGCCACCCTTAGAGCAGTTCATGGAGATGCCAAGCATGGACCGGAGAGAGCTCTTCTTCCG
AGATATTGAACGTGGTGATATAGTGATTGGAAGAATTAGCTCTATTCGGGAGTTTGGTTTTTTCATGGTG
TTGATCTGTTTAGGAAGTGGCATCGTGAGAGATATTTCGCACTTAGAAATCACAGCTCTTTGTCCCTTAA
GAGATGTGCCTTCTCACAGTAACCATGGAGATCCTTTATCATATTATCAAACTGGTGACATAATTCGAGC
TGGAATCAAGGATATTGACAGATACCATGAAAAGCTTGCAGTATCTCTGTATAGCTCATCTCTTCCTCCA
CACATGGCTGGCATTAAACTAGGTGTGATCACTTCTGAAGAGCTTCCTTTGTACTACAGGAGGAGTGTTG
AACTAAATAGTAATTCTTTGGAGTCCTATGAAAATATCATGCAGAGTTCTCTGGGATTTGTTAATCCAGG
AGTAGTTGAATTCCTTCTAGAGAAACTAGGAATAGATGAATCTCATCCACCGTCTTTAATGAGAGGCCTA
CAAAGCAAAAATTTCTCTGAAGATGATTTTGCTTCAGCATTAAGAAAGAAGCAGTCAGCATCTTGGGCTT
TAAAATGTGTGAAGATTGGAGTCGATTATTTTAAGGTGGGGCGACATGTGGATGCTATGAACGAATACAA
TAAAGCTCTGGAAATAGACAAACAAAATGTGGAGGCTTTGGTAGCGCGAGGAGCATTATATGCAACAAAA
GGAAGTCTAAACAAAGCAATAGAAGATTTTGAGCTCGCATTAGAAAACTGCCCAACTCATAGGAATGCAA
GGAAATATCTCTGCCAGACACTTGTAGAAAGGGGAGGGCAGTTAGAAGAAGAAGAAAAGTTTCTAAATGC
TGAAAGTTACTATAAGAAAGCTCTGACTTTGGATGAGACTTTTAAAGATGCAGAGGATGCTTTGCAGAAA
CTTCATAAATATATGCAGGTGATTCTTTATTTCCTCTTTGAAATTTGA

Translation (435 aa):
MAGMRLPSRRQSFPAPVSRENGLKTSSGTQWVKSLSIERPDLTDSQASQGKEKRVDNIEIQKFISKKADL
LFALSWKSDASPPSEVHDDNDNLYAVMPPLEQFMEMPSMDRRELFFRDIERGDIVIGRISSIREFGFFMV
LICLGSGIVRDISHLEITALCPLRDVPSHSNHGDPLSYYQTGDIIRAGIKDIDRYHEKLAVSLYSSSLPP
HMAGIKLGVITSEELPLYYRRSVELNSNSLESYENIMQSSLGFVNPGVVEFLLEKLGIDESHPPSLMRGL
QSKNFSEDDFASALRKKQSASWALKCVKIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATK
GSLNKAIEDFELALENCPTHRNARKYLCQTLVERGGQLEEEEKFLNAESYYKKALTLDETFKDAEDALQK
LHKYMQVILYFLFEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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