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Report for CCDS80026.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80026.1 Public Mus musculus 3 Bank1 23 108 98 CCDS HistoryNCBI Gene:242248Re-query CCDS DB by CCDS ID:80026.1Re-query CCDS DB by GeneID:242248See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80026.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000196159.4 ENSMUSP00000142366.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000196159.4Link to Ensembl Protein Viewer:ENSMUSP00000142366.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000196159Re-query CCDS DB by Protein ID:ENSMUSP00000142366
Original member Current member NCBI NM_001310749.1 NP_001297678.1 Accepted alive Link to Nucleotide Sequence:NM_001310749.1Link to Protein Sequence:NP_001297678.1Re-query CCDS DB by Nucleotide ID:NM_001310749Re-query CCDS DB by Protein ID:NP_001297678Link to BLAST:NP_001297678.1

Chromosomal Locations for CCDS 80026.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 136054411 136054470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136055750 136055802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136057396 136057425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136064113 136064176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136066326 136066504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136083170 136083238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136093285 136093590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136100281 136100589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136103850 136103928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136213830 136214026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136234614 136234719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136242914 136243053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136247632 136247770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136254873 136255024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136325870 136325939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1953 nt):
ATGCTTCCTGTGGCTTCTGGCACTAGGGGTAGCACCCAGGATCTGTTCCAGGTTGGCCTAGCACCTCCAG
GTCCTGAAGACTACCTTGAGGTCAGCATTCCAACAGACTCAAGAGCCAAGTATCCTGAGGACACAAGTGG
ACAGAAGGGAACTGACGTCCTAGCATCTCTGAGACCATCTGTGCCTCGGGTACTAGTGCTTCCTGGGGAA
ATTCCATGTGAGAAACCTGGTGAGATATTCATTCTGTTGAAAGATGAACTAATTGGCGAAATTCTAGAGG
TTGAATTTATATCAACCAACAAGCGCCTCAGAGCACGGCCAGCACGTTGGAATAAGAGTGTCTGGCATAT
GAAAGCTGCAGATTTTCCAGCTGGCTCGGTCACTGTCAATATCCACTGTGATGGAATCATCAAGGCCACA
ACAGAGATTAAATACTGTTCAGCAGCAAAAGCAACAGAAAGTCCATTTAGAGTGTCAGACCCGGGCAAGA
GTTTGTGCCAGAAAAGCATCGAAGAACTTGATAATGTTCTTGCATCTATATTCAAGCGTGAGATACCATA
TTATGAATTCAAACATCTCCAAGCTGAAACTTACCCTCAAAAAGAACGTACTCACACCACAGAGCTCCCA
ACACTTCTTCACTGTGCAGCAAAATTTGGCTTAAAGAATCTGGCTCTTCATCTGCTGCAGTGTTCAGGAG
CAACCAGGGCAGCTAGAATGAAGGCGACAGATGGTTCAGACCTGCTGCATATTGCTGAAAGGCATGGTCA
TGAAGAACTCAAGGAAGTCTTTGAAGACTTTCTCAGCCAAAACACTGGCAGAAATAGCAAGCAAGAAAAT
GACTATGAAGAAGATGTAATCTCATTTTCCACATATTCACCCTCCATGCCGTCTCCGGCATCCCTTCATG
AACTCAGGAAGACACACAGGCGGAACACAGACAGATCTGAGGAGCCTGAAAGGTCTGTGGAGATGAAGGA
GGAAGAAGCAGGTGCTGAGGCAAGACGCAGCCTGTCAGAGGGTGAAAGGGAAAGCTCCGAGAACCAGTAT
GACGATCTGTATGTTTTCATCCCTGGGTTTGACACCGAAGGCAACTCTGAAGAGCCTCTCCCACACTGCA
GGCCACCTCTGCTGCCACCACGACCAGGCACTGCTGCCTCCCAGCTAGAAAGACCTCACTTTACCTCACA
AGGAAAAGTACTGGAAGACCAAATGGAAAGAAGTCAAAACTGGAATGATCTCAATGCAAGACCAGAGACA
AGAGAGGAATCCAGCAGAGAAGAAAAGAAAGAAGAAGCCCAGGAGGAGGAGGAAGAAGAAGAAAACCCAT
ATGCATTTGCAGAGACTGAAGACAATGAGTATGACCTGATACTGGCCAGTAAGAGTGTCAAGAAAAGAAC
TGGAAATCGGTCTTTCATTATAAACAGACCACCGGCTCCCACACCCCGGCCCACGCACATCCCTCCCAAA
GAAGAAACAACACCTTACATAGCTCAAGTGTTCCAACAAAAGGCAGCCCGAAGACAATCTGATGGTGATA
AGTTCTACAGTCTACCTAAGAAACCCGACAAAACTCGGATGGAGGGCCCAACCTTCCCTAGTACAAGGGA
TTATCTGACTACTGGGCAGGAAGAACTGATCCTCCTGCAGGAGAGAGTCAAGAATGGGAAAATGTCTGTG
GATGAAGCTCTGGAGAAATTTAAACATTGGCAGATGGGAAAGAGTGGTCTGGAAATGATTCAGCAGGAAA
AGCTACGGCAACTACGAGACAACATTATTGGGAAAAGGCCAGAAGATGAAAATGCCTATGATAAACTGAC
CATTGTGCACCATCCAAGTGGTAATACTGCCCACAATGAAAATATGTTGTACAACAGTCCATTCAACAGT
AAGTTTCCTGCTCGAATCCAAGTTGAAAAGGAGTTTGGTTTCTGCTGCAAAAAAGATCATTAA

Translation (650 aa):
MLPVASGTRGSTQDLFQVGLAPPGPEDYLEVSIPTDSRAKYPEDTSGQKGTDVLASLRPSVPRVLVLPGE
IPCEKPGEIFILLKDELIGEILEVEFISTNKRLRARPARWNKSVWHMKAADFPAGSVTVNIHCDGIIKAT
TEIKYCSAAKATESPFRVSDPGKSLCQKSIEELDNVLASIFKREIPYYEFKHLQAETYPQKERTHTTELP
TLLHCAAKFGLKNLALHLLQCSGATRAARMKATDGSDLLHIAERHGHEELKEVFEDFLSQNTGRNSKQEN
DYEEDVISFSTYSPSMPSPASLHELRKTHRRNTDRSEEPERSVEMKEEEAGAEARRSLSEGERESSENQY
DDLYVFIPGFDTEGNSEEPLPHCRPPLLPPRPGTAASQLERPHFTSQGKVLEDQMERSQNWNDLNARPET
REESSREEKKEEAQEEEEEEENPYAFAETEDNEYDLILASKSVKKRTGNRSFIINRPPAPTPRPTHIPPK
EETTPYIAQVFQQKAARRQSDGDKFYSLPKKPDKTRMEGPTFPSTRDYLTTGQEELILLQERVKNGKMSV
DEALEKFKHWQMGKSGLEMIQQEKLRQLRDNIIGKRPEDENAYDKLTIVHHPSGNTAHNENMLYNSPFNS
KFPARIQVEKEFGFCCKKDH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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