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Report for CCDS80034.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80034.1 Public Mus musculus 3 Unc5c 23 108 98 CCDS HistoryNCBI Gene:22253Re-query CCDS DB by CCDS ID:80034.1Re-query CCDS DB by GeneID:22253See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80034.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075282.9 ENSMUSP00000074758.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075282.9Link to Ensembl Protein Viewer:ENSMUSP00000074758.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000075282Re-query CCDS DB by Protein ID:ENSMUSP00000074758
Original member Current member EBI ENSMUST00000142762.1 ENSMUSP00000118212.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000142762.1Link to Ensembl Protein Viewer:ENSMUSP00000118212.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000142762Re-query CCDS DB by Protein ID:ENSMUSP00000118212
Original member NCBI NM_001293561.1 NP_001280490.1 Updated not alive Link to Nucleotide Sequence:NM_001293561.1Link to Protein Sequence:NP_001280490.1Re-query CCDS DB by Nucleotide ID:NM_001293561Re-query CCDS DB by Protein ID:NP_001280490
Current member NCBI NM_001293561.2 NP_001280490.1 Accepted alive Link to Nucleotide Sequence:NM_001293561.2Link to Protein Sequence:NP_001280490.1Re-query CCDS DB by Nucleotide ID:NM_001293561Re-query CCDS DB by Protein ID:NP_001280490Link to BLAST:NP_001280490.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001280490.1 950 O08747-2 950 100% 0 0

Chromosomal Locations for CCDS 80034.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 141465714 141465837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141677987 141678208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141714644 141714787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141733838 141733941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141757714 141757894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141768444 141768611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141771018 141771182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141786857 141786913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141788871 141789062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141789729 141790073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141791792 141791879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141801279 141801447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141803720 141803953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141816786 141816935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141818031 141818195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141827501 141827679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141828407 141828572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2853 nt):
ATGAGGAAAGGTCTGAGGGCGACAGCGGCCCGCTGCGGACTGGGACTAGGATACTTGCTGCAGATGCTTG
TGTTACCTGCCCTGGCCCTGCTAAGCGCCAGTGGCACCGGCTCCGCCGCTCAAGATGATGAATTTTTTCA
CGAACTCCCAGAAACCTTTCCATCTGACCCACCTGAGCCATTGCCACACTTCCTCATTGAGCCCGAGGAA
GCTTACATTGTGAAGAACAAGCCTGTGAACCTGTATTGTAAAGCCAGCCCTGCCACCCAGATCTACTTCA
AGTGCAACAGCGAGTGGGTTCATCAGAAGGACCACGTAGTAGACGAGAGAGTAGATGAAACCTCTGGTCT
AATTGTGAGAGAAGTGAGCATTGAGATTTCACGCCAGCAGGTGGAGGAACTGTTTGGGCCTGAAGATTAC
TGGTGCCAGTGTGTGGCCTGGAGCTCAGCAGGCACTACGAAGAGTCGGAAGGCATACGTGCGCATTGCGT
ATCTGCGGAAGACATTCGAGCAGGAACCCTTGGGAAAGGAAGTGTCCTTGGAGCAGGAAGTCTTACTCCA
GTGTCGGCCACCTGAAGGGATCCCAGTGGCTGAGGTAGAATGGCTAAAGAATGAAGACATAATTGATCCT
GCTGAAGATCGGAACTTTTATATTACTATCGATCACAACCTGATCATCAAGCAAGCCCGACTCTCAGATA
CAGCAAATTATACCTGTGTTGCCAAAAATATTGTTGCCAAGAGAAAAAGCACCACAGCCACTGTCATCGT
GTATGTTAATGGTGGCTGGTCCACCTGGACAGAGTGGTCTGTGTGTAACAGCCGCTGTGGGCGAGGATAT
CAGAAACGCACAAGAACCTGCACCAACCCAGCCCCACTCAATGGTGGGGCCTTCTGTGAGGGGCAGAGTG
TGCAGAAAATAGCATGCACTACGTTATGTCCAGTGGATGGTAGGTGGACTTCATGGAGCAAATGGTCAAC
CTGTGGGACTGAATGCACCCACTGGCGCAGGAGGGAGTGTACAGCACCAGCCCCCAAGAACGGGGGTAAG
GACTGTGATGGCCTGGTCCTCCAATCCAAGAACTGCACTGATGGGCTGTGCATGCAGGGATTCATTTACC
CCATTTCAACTGAGCACAGACCCCAGAATGAATATGGATTTTCTTCTGCTCCTGACTCAGATGATGTGGC
TCTCTACGTGGGGATTGTGATCGCTGTAACAGTCTGTCTGGCGATCACTGTTGTGGTGGCCCTGTTTGTG
TATCGGAAGAACCACCGTGACTTTGAGTCTGACATCATTGACTCCTCAGCACTCAATGGCGGCTTTCAGC
CTGTGAACATCAAGGCTGCCAGACAAGATCTCCTGGCTGTCCCCCCTGACCTCACCTCAGCTGCAGCCAT
GTACAGGGGACCTGTCTATGCTCTGCATGATGTCTCAGACAAAATCCCAATGACCAACTCTCCAATTCTG
GACCCACTACCCAACTTGAAAATCAAAGTGTACAACAGCTCAGGTGCTGTCACTCCTCAGGATGACCTTG
CCGAGTTCTCATCCAAACTGTCACCCCAGATGACCCAGTCCTTGCTAGAGAATGAGGCCCTTAACCTGAA
GAACCAGAGCCTCGCAAGACAGACTGACCCATCCTGCACAGCATTTGGTACCTTCAACTCTCTTGGGGGT
CACCTCATCATTCCTAATTCAGGAGTAAGCTTGCTGATTCCCGCTGGGGCCATTCCTCAGGGGAGAGTCT
ATGAAATGTATGTGACTGTACACAGGAAAGAAAATATGAGGCCCCCCATGGAAGACTCTCAGACCCTACT
TACCCCTGTGGTGAGCTGTGGGCCTCCTGGAGCTCTGCTGACCCGCCCTGTCATCCTCACTCTGCATCAC
TGTGCAGACCCCAGCACCGAGGACTGGAAGATCCAGCTCAAAAACCAGGCAGTGCAGGGACAATGGGAGG
ATGTTGTGGTGGTTGGGGAGGAGAACTTCACAACCCCCTGTTACATTCAGCTGGATGCAGAGGCTTGCCA
TATCCTCACAGAGAACCTCAGTACCTATGCCCTGGTTGGGCAGTCCACCACCAAAGCAGCTGCCAAGCGT
CTTAAACTGGCCATCTTTGGGCCCCTCTGCTGCTCTTCCCTGGAGTACAGCATTAGAGTCTACTGCCTGG
ATGACACACAGGATGCCCTGAAGGAAGTTCTACAACTGGAGAGGCAAATGGGAGGACAGCTCCTAGAAGA
ACCCAAGGCTCTTCATTTTAAAGGCAGCATCCACAACCTGCGCCTGTCTATTCATGACATCGCCCATTCC
CTCTGGAAGAGCAAATTGCTGGCTAAGTATCAGGAAATTCCATTTTACCACATCTGGAGTGGCTCTCAAA
GAAACCTCCACTGCACCTTCACTCTGGAAAGACTCAGCCTAAACACAGTGGAACTGGTTTGCAAACTCTG
TGTGCGGCAGGTTGAAGGAGAAGGGCAGATCTTCCAGCTCAACTGTACTGTGTCAGAGGAACCTACTGGC
ATCGACTTACCTCTCCTGGACCCTGCTAGTACCATCACCACTGTCACCGGACCAAGTGCTTTCAGCATTC
CTCTCCCTATCCGGCAGAAGCTATGCAGCAGCCTGGATGCCCCTCAAACAAGAGGCCATGACTGGAGGAT
GCTGGCCCATAAACTCAACCTGGACAGGTACTTGAATTACTTTGCCACCAAATCGAGCCCAACTGGCGTA
ATCCTGGATCTTTGGGAAGCACAGAACTTCCCAGATGGAAACCTGAGCATGCTGGCAGCCGTCCTGGAAG
AAATGGGAAGACATGAGACAGTGGTGTCCTTGGCAGCAGAAGGACAGTATTGA

Translation (950 aa):
MRKGLRATAARCGLGLGYLLQMLVLPALALLSASGTGSAAQDDEFFHELPETFPSDPPEPLPHFLIEPEE
AYIVKNKPVNLYCKASPATQIYFKCNSEWVHQKDHVVDERVDETSGLIVREVSIEISRQQVEELFGPEDY
WCQCVAWSSAGTTKSRKAYVRIAYLRKTFEQEPLGKEVSLEQEVLLQCRPPEGIPVAEVEWLKNEDIIDP
AEDRNFYITIDHNLIIKQARLSDTANYTCVAKNIVAKRKSTTATVIVYVNGGWSTWTEWSVCNSRCGRGY
QKRTRTCTNPAPLNGGAFCEGQSVQKIACTTLCPVDGRWTSWSKWSTCGTECTHWRRRECTAPAPKNGGK
DCDGLVLQSKNCTDGLCMQGFIYPISTEHRPQNEYGFSSAPDSDDVALYVGIVIAVTVCLAITVVVALFV
YRKNHRDFESDIIDSSALNGGFQPVNIKAARQDLLAVPPDLTSAAAMYRGPVYALHDVSDKIPMTNSPIL
DPLPNLKIKVYNSSGAVTPQDDLAEFSSKLSPQMTQSLLENEALNLKNQSLARQTDPSCTAFGTFNSLGG
HLIIPNSGVSLLIPAGAIPQGRVYEMYVTVHRKENMRPPMEDSQTLLTPVVSCGPPGALLTRPVILTLHH
CADPSTEDWKIQLKNQAVQGQWEDVVVVGEENFTTPCYIQLDAEACHILTENLSTYALVGQSTTKAAAKR
LKLAIFGPLCCSSLEYSIRVYCLDDTQDALKEVLQLERQMGGQLLEEPKALHFKGSIHNLRLSIHDIAHS
LWKSKLLAKYQEIPFYHIWSGSQRNLHCTFTLERLSLNTVELVCKLCVRQVEGEGQIFQLNCTVSEEPTG
IDLPLLDPASTITTVTGPSAFSIPLPIRQKLCSSLDAPQTRGHDWRMLAHKLNLDRYLNYFATKSSPTGV
ILDLWEAQNFPDGNLSMLAAVLEEMGRHETVVSLAAEGQY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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