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Report for CCDS80094.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80094.1 Public Mus musculus 4 Stra6l 23 108 98 CCDS HistoryNCBI Gene:74152Re-query CCDS DB by CCDS ID:80094.1Re-query CCDS DB by GeneID:74152See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80094.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107782.7 ENSMUSP00000103411.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107782.7Link to Ensembl Protein Viewer:ENSMUSP00000103411.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107782Re-query CCDS DB by Protein ID:ENSMUSP00000103411
Original member Current member NCBI NM_001305421.1 NP_001292350.1 Accepted alive Link to Nucleotide Sequence:NM_001305421.1Link to Protein Sequence:NP_001292350.1Re-query CCDS DB by Nucleotide ID:NM_001305421Re-query CCDS DB by Protein ID:NP_001292350Link to BLAST:NP_001292350.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001292350.1 530 Q9DBN1-2 530 100% 0 0

Chromosomal Locations for CCDS 80094.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 45864949 45865003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45866175 45866295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45867204 45867249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45869077 45869205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45869560 45869630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45870781 45870892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45873649 45873802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45877909 45877984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45879417 45879498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45879678 45879726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45880168 45880285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45881426 45881545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45882697 45882860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45884542 45884688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45885251 45885399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1593 nt):
ATGTTCTTGTTCTCAGAAGGCTACCAGCCCCTGACGGTTCCTCAGTGGGCCCAAGCCTTTGTGCTTTTCA
TCGGAGGCATGGAGGTCGGCCTCTCCTACTTCCCTTTCTTTGCCTGCCTGTCCTCAGAGTTCCAGCTGGT
CAGCTCCATCCTGGGCTTCAGCTACTCCCTGACCTGGTTTGTGGTTACTGTTCTTCAGATCTCACAGTGT
CCCCATGGGCAGTTTCTGGGGAGGTTCGAGACCCTCGTTTTCTACTGGCCCTCACTGTTGTGCCTGGGTT
TCCTGCTGGGTCGTTTCCTGCACATGTTCCTTAAGGCTCTGCCTGTCCACCTGGGCCTGGAGCCGCAGAC
AGAAGAAAAGTCGATGCTGGAAGCCCACCAGGCAAAGCACGTGAAGCAGCTCTTGAGCAAGCCCCGCCCA
CAAGAAGGCGAAAAGTCTTGGTTTCAAACCAGGGTGTATGAGTGGGACCCCTGCTTCCAGTTTCCCAGCA
GGATGGTCGGGACCCTGCTGCTGGCGTTCATCTGCCTCTACCTTTTCATCGTCATTGAGTTTTGTGTGTT
TCTGCACGTGAGAGACAAGCTGGACATGTTTGAAGACAAACTGGAGAGCTACCTCACCCATATGAACGAG
ACGGGGACCTTGACCCCAATCATCTTACAGGTGAAAGAACTGATCAGCGTTACTAAAGGAGTCTGGGTGG
TGACCATTTTGCCTGCCGCCCTCACATGTGTCACCTATCTCTTCCACATTCTAGCCTGTTACAGAAAGCA
TATGAAGAGGCTATGGGCTGGAGACAAACACTTCCTCCCTCAGAAGTTCCACAGTCCCTCTTCAGCAGCA
AGTGTGGTGGCCATTGCAAGGTACTCTGGCTGGCAGATAGCCTACATCCTCTGGGGCTACCTCATCATCC
ATGTGGTTCAGAGCCTCTGTGGGGTGATGCTCATGTACGGCCTGGTGCTGCCCATCATCCACCACCGAGG
CCTGGAGATGCTGCAAGGATTTGGCCTTGGGGTCCTCACCCTGTCCATAGTCGTGGGCCTTATAATCCTA
CAAGTGTGGATTGCTGGCACGTTCTTCCTGCAGCCAAAGCTGGGCACATCCGACAAGCAGAAGCCCCTGG
CTCTCAACAACAGGAGAGCCTTCCACAACTTCAACTACTTCCTGTTTTTCTACAACGTGCTGCTGGGCCT
GGGGGCCTGCCTCTCCAGGCTGCTCATCAGCTGCCTCCTGGGCACTTGGCTGATCGCACGCATCGACAGG
ACCATCATGCAGAGTGGCTATGAGGGTGCAGACATGGGCTTTGGTGCGTGGATTGGTATGCTCTTTGTGG
ATCACTACCACACCAACCCTGTGTTGGTCAGCTTTTGCCACATTCTGATCACAAGCCACAAGGACAGGAA
GCTGCAGAAGACTGTGAAATACTGGTGCCTGAACCAGTCAGCAGGTCCCCGCTTCTCGGCCAGAGCCAGA
ACGAGGTGGTTCCTGCTGCAGACGCTGATCAACAATCCCAGGCTTGTCATGCTCAGAAAATCAAAATCAG
GTCATAGTTCGGGCGAGTTCACACAGATTCTGTTGACCTGCTCAGACTGCTGA

Translation (530 aa):
MFLFSEGYQPLTVPQWAQAFVLFIGGMEVGLSYFPFFACLSSEFQLVSSILGFSYSLTWFVVTVLQISQC
PHGQFLGRFETLVFYWPSLLCLGFLLGRFLHMFLKALPVHLGLEPQTEEKSMLEAHQAKHVKQLLSKPRP
QEGEKSWFQTRVYEWDPCFQFPSRMVGTLLLAFICLYLFIVIEFCVFLHVRDKLDMFEDKLESYLTHMNE
TGTLTPIILQVKELISVTKGVWVVTILPAALTCVTYLFHILACYRKHMKRLWAGDKHFLPQKFHSPSSAA
SVVAIARYSGWQIAYILWGYLIIHVVQSLCGVMLMYGLVLPIIHHRGLEMLQGFGLGVLTLSIVVGLIIL
QVWIAGTFFLQPKLGTSDKQKPLALNNRRAFHNFNYFLFFYNVLLGLGACLSRLLISCLLGTWLIARIDR
TIMQSGYEGADMGFGAWIGMLFVDHYHTNPVLVSFCHILITSHKDRKLQKTVKYWCLNQSAGPRFSARAR
TRWFLLQTLINNPRLVMLRKSKSGHSSGEFTQILLTCSDC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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