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Report for CCDS80256.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80256.1 Public Mus musculus 5 Ctbp1 23 108 98 CCDS HistoryNCBI Gene:13016Re-query CCDS DB by CCDS ID:80256.1Re-query CCDS DB by GeneID:13016See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80256.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000202868.3 ENSMUSP00000144024.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000202868.3Link to Ensembl Protein Viewer:ENSMUSP00000144024.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000202868Re-query CCDS DB by Protein ID:ENSMUSP00000144024
Original member Current member NCBI NM_001198860.1 NP_001185789.1 Accepted alive Link to Nucleotide Sequence:NM_001198860.1Link to Protein Sequence:NP_001185789.1Re-query CCDS DB by Nucleotide ID:NM_001198860Re-query CCDS DB by Protein ID:NP_001185789Link to BLAST:NP_001185789.1

Chromosomal Locations for CCDS 80256.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 33248500 33248683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33249107 33249224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33249587 33249714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33250371 33250501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33250858 33251072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33259138 33259344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33261009 33261153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33266883 33267037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33269442 33269448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1290 nt):
ATGTCAGGCGTCCGACCTCCCATCATGAACGGGCCCATGCACCCCCGGCCCCTGGTGGCGCTGCTGGATG
GCCGGGACTGCACAGTGGAGATGCCTATCCTGAAGGATGTGGCCACAGTAGCCTTCTGTGATGCACAGTC
CACACAGGAGATCCATGAGAAGGTACTGAATGAGGCTGTGGGTGCCCTGATGTACCATACCATCACACTG
ACCAGAGAAGATCTGGAGAAGTTTAAAGCTCTTAGAATCATCGTCCGAATTGGCAGCGGGTTTGACAATA
TCGACATCAAGTCAGCTGGGGATCTAGGCATCGCAGTGTGCAATGTGCCGGCAGCATCTGTGGAAGAAAC
GGCAGACTCCACCCTGTGCCACATCCTGAACCTGTACCGACGAACCACCTGGCTACACCAGGCCCTTCGG
GAAGGCACTCGAGTCCAGAGTGTAGAGCAGATCCGAGAGGTGGCTTCAGGAGCTGCCAGGATCCGTGGAG
AGACCTTGGGCATCATTGGACTAGGTCGTGTGGGCCAGGCGGTGGCACTTCGGGCAAAGGCTTTTGGCTT
CAACGTCCTCTTCTATGATCCATACCTATCTGATGGAATCGAGCGGGCCCTGGGGCTACAGCGCGTGAGC
ACGCTGCAGGACCTGCTCTTCCACAGTGACTGCGTTACCCTGCATTGCGGCCTCAATGAGCACAACCACC
ACCTCATCAATGACTTTACTGTCAAGCAGATGAGACAAGGAGCCTTTCTGGTGAACACAGCCCGTGGTGG
CCTGGTGGATGAGAAGGCACTGGCCCAGGCCCTGAAGGAAGGGCGGATCCGTGGCGCAGCGCTGGACGTG
CATGAGTCAGAGCCCTTCAGCTTTAGCCAGGGACCCTTAAAGGATGCACCCAACCTCATCTGCACACCCC
ATGCTGCATGGTACAGTGAGCAGGCGTCCATTGAGATGAGAGAGGAGGCAGCCCGGGAAATCCGGCGAGC
CATCACAGGCCGGATCCCAGATAGCTTGAAAAACTGTGTCAACAAGGACCACCTGACAGCCGCCACGCAC
TGGGCCAGCATGGACCCTGCTGTGGTGCACCCTGAGCTCAATGGGGCTGCCTACAGGTACCCTCCAGGCG
TCGTGAGTGTGGCCCCCACTGGCATCCCAGCTGCTGTGGAAGGGATTGTTCCCAGTGCCATGTCCCTGTC
TCATGGCCTGCCCCCTGTGGCCCACCCACCCCACGCTCCCTCTCCTGGCCAGACTGTCAAGCCTGAGGCG
GATAGAGACCATACGAGTGACCAGTTGTAG

Translation (429 aa):
MSGVRPPIMNGPMHPRPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITL
TREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALR
EGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGIERALGLQRVS
TLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDV
HESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEAAREIRRAITGRIPDSLKNCVNKDHLTAATH
WASMDPAVVHPELNGAAYRYPPGVVSVAPTGIPAAVEGIVPSAMSLSHGLPPVAHPPHAPSPGQTVKPEA
DRDHTSDQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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