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Report for CCDS80322.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80322.1 Public Mus musculus 5 Ambn 23 108 98 CCDS HistoryNCBI Gene:11698Re-query CCDS DB by CCDS ID:80322.1Re-query CCDS DB by GeneID:11698See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80322.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000198265.4 ENSMUSP00000142944.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000198265.4Link to Ensembl Protein Viewer:ENSMUSP00000142944.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000198265Re-query CCDS DB by Protein ID:ENSMUSP00000142944
Original member Current member NCBI NM_001303431.1 NP_001290360.1 Accepted alive Link to Nucleotide Sequence:NM_001303431.1Link to Protein Sequence:NP_001290360.1Re-query CCDS DB by Nucleotide ID:NM_001303431Re-query CCDS DB by Protein ID:NP_001290360Link to BLAST:NP_001290360.1

Chromosomal Locations for CCDS 80322.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 88456092 88456106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88456885 88456953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88459359 88459424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88460703 88460750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88461633 88461743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88463227 88463466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88464471 88464509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88465131 88465190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88465290 88465334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88465706 88465750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88467452 88467982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1269 nt):
ATGTCAGCATCTAAGATTCCACTTTTCAAAATGAAGGGCCTGATCCTGTTCCTGTCCCTAGTGAAAATGA
GC
CTCGCCGTGCCGGCATTTCCTCAACAACCTGGGGCTCAAGGCATGGCACCTCCTGGCATGGCTAGTTT
G
AGCCTTGAGACAATGAGACAGTTGGGAAGCTTGCAGGGACTCAACGCACTTTCTCAGTATTCTAGACTT
GGC
TTTGGAAAAGCACTTAATAGTTTATGGTTGCACGGACTTCTCCCACCGCATAACTCTTTCCCATGGA
TA
GGACCAAGGGAACATGAAACCCAGCAGTATGAATATTCTTTGCCTGTGCATCCCCCACCTCTCCCATC
A
CAGCCATCCTTGCAGCCTCACCAGCCAGGACTGAAACCCTTCCTCCAGCCCACTGCTGCAACCGGTGTC
CAG
GTCACACCCCAGAAGCCAGGGCCTCAGCCTCCAATGCACCCTGGACAGCTGCCCTTGCAGGAAGGAG
AG
CTGATAGCACCAGATGAGCCGCAGGTGGCACCATCCGAAAACCCACCAACACCTGAGGTACCAATAAT
G
GATTTTGCTGATCCACAATTTCCAACCGTGTTCCAGATCGCCCGTTCAATATCTCGGGGACCAATGGCA
CAC
AACAAAGCATCCGCTTTTTACCCAGGAATGTTTTACATGTCTTATGGAGCAAACCAATTGAATGCTC
CT
GCCAGAATTGGCTTCATGAGTTCAGAAGAAATGCCTGGAGAAAGAGGAAGTCCCATGGCCTATGGAAC
T
CTGTTCCCAAGATTTGGAGGCTTCAGGCAAACCCTTAGGAGACTGAATCAGAATTCACCCAAGGGAGGA
GAC
TTTACTGTGGAAGTAGATTCCCCAGTATCTGTTACCAAAGGCCCTGAAAAAGGAGAAGGTCCAGAAG
GC
TCTCCACTGCAAGAGGCCAACCCAGGCAAACGGGAAAACCCCGCTCTCCTTTCACAAATGGCACCTGG
G
GCCCATGCAGGACTTCTTGCTTTCCCCAATGACCACATCCCCAGTATGGCAAGGGGTCCTGCAGGGCAA
AGA
CTCCTTGGAGTCACCCCTGCAGCTGCAGACCCACTGATCACCCCTGAATTAGCAGAAGTTTATGAAA
CC
TATGGTGCTGATGTTACCACACCCCTGGGTGATGGAGAAGCAACCATGGATATCACCATGTCCCCAGA
C
ACTCAGCAGCCACTGCTACCTGGAAACAAAGTGCACCAGCCCCAGGTGCACAACGCATGGCGTTTCCAA
GAG
CCCTGA


Translation (422 aa):
MSASKIPLFKMKGLILFLSLVKMSLAVPAFPQQPGAQGMAPPGMASLSLETMRQLGSLQGLNALSQYSRL
G
FGKALNSLWLHGLLPPHNSFPWIGPREHETQQ
YEYSLPVHPPPLPSQPSLQPHQPGLKPFLQPTAATGV
Q
VTPQKPGPQPPMHPGQLPLQEGELIAPDEPQVAPSENPPTPE
VPIMDFADPQFPTVFQIARSISRGPMA
H
NKASA
FYPGMFYMSYGANQLNAPARIGFMSSEEMPGERGSPMAYGTLFPRFGGFRQTLRRLNQNSPKGG
D
FTVEVDSPVSVTKGPEKGEGPEGSPLQEANPGKRENPALLSQMAPGAHAGLLAFPNDHIPSMARGPAGQ
R
LLGVTPAAADPLITPELAEVYETYGADVTTPLGDGEATMDITMSPDTQQPLLPGNKVHQPQVHNAWRFQ
E
P




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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