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Report for CCDS80862.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80862.1 Public Mus musculus 8 Thsd1 23 108 98 CCDS HistoryNCBI Gene:56229Re-query CCDS DB by CCDS ID:80862.1Re-query CCDS DB by GeneID:56229See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80862.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000160585.1 ENSMUSP00000125118.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160585.1Link to Ensembl Protein Viewer:ENSMUSP00000125118.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160585Re-query CCDS DB by Protein ID:ENSMUSP00000125118
Original member Current member NCBI NM_001293688.1 NP_001280617.1 Accepted alive Link to Nucleotide Sequence:NM_001293688.1Link to Protein Sequence:NP_001280617.1Re-query CCDS DB by Nucleotide ID:NM_001293688Re-query CCDS DB by Protein ID:NP_001280617Link to BLAST:NP_001280617.1

Chromosomal Locations for CCDS 80862.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 22238540 22238597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22242997 22243956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22258292 22259670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2397 nt):
ATGAAACCCATGTTGAAAGACTTTTCAAATCTCTTGCTGGTGGTGCTCTGTGACTATGTCCTCGGAGAAG
CCGAATACCTCCTCCTCCAAGAGCCAGTCCATGTGGCACTGAGCGACAGAACGGTGTCAGTGGGTTTCCA
CTACCTCAGTGACGTCAACGGGACACTGAGGAATGTGTCTGTCATGCTGTGGGAGGCCAACACCAATCGG
ACTCTTACCACTAAGTACCTCCTGACCAACCAGGCCCAAGGAACACTCCAGTTTGAATGTTTCTACTTCA
AAGAGGCTGGTGACTACTGGTTTGTAATGATCCCGGAAGTGACAGACAATGGCACGCAAGTTCCACTCTG
GGAGAAAAGTGCCTTTCTGAAGGTAGAATGGCCTGTCTTTCACATTGATTTAAATAGGACAGCCAAGGCA
GCAGAAGGCACCTTTCAAGTGGGTGTTTTTACCACCCAACCGCTCTGCCTGTTTCCCGTGGACAAGCCAG
ACATGCTGGTGGATGTTATTTTCACTGACCGTCTTCCGGAGGCAAGAGCAAGTTTGGGACAGCCGCTGGA
GATCAGAGCCAGCAAAAGGACAAAACTCACTCAAGGTCAGTGGGTCGAGTTTGGCTGTGCACCGGTAGGG
GTGGAAGCCTACGTTACAGTCATGCTGAGGCTGTTGGGTCAAGACTCAGTCATTGCTTCTACGGGACCTA
TTGACCTGGCTCAAAAATTCGGATACAAATTGATGATGGCACCGGAAGTCACGTGTGAGTCTGTGCTGGA
GGTGATGGTACTGCCACCTCCTTGTGTCTTCGTCCAAGGAGTCCTGGCTGTTTACAAAGAAGCCCCCAAA
CGCCCGGAGGAGAGGACTTTCCAGGTGGCTGAAAACAGACTGCCCCTGGGAGAGAGGAGAACGGTGTTCA
ACTGCACTTTATTTGATGTAGGGAAGAACAAATACTGTTTTAACTTTGGAATTGTGAAGAAAGGCCATTT
TTCTGCAAAGGAATGCATGCTAATTCAGAGAAATATAGTTTTCCGGCCACCAGGCCCATCGCCTGTTTCA
CCCCAGGACCCTGTGAAGTCCAACAACGTGGTGACCGTCACAGGGATCTCCCTGTGCCTGTTCATCATCT
TTGCCACGGTGCTCATCACTCTCTGGAGGAGGTTTGGCCGAGCCCCCAAATGCAGCACGCCCGTTCGCCA
CAACTCCATCCATTCCCCTGGCTTCCGGAAGAACTCCGATGAAGAGAACATCTGCGAGCTGAGTGAGCCT
CGCGGAAGCTTCTCGGATGCCGGTGACGGACCTAGGGGAAGCCCAGGGGACACGGGCATCCCATTGACTT
ACAGGTGCAGTGCATCAGCGCCTCCTGAGGATGAGGCCTCGGGCAGTGAGAGCTTCCAGTCCAACGCTCA
GAAGATCATCCCGCCCTTGTTTAGCTACCGCCTTGCCCAGCAGCAGCTGAAGGAGATGAAGAAGAAAGGG
CTGACCGAGACCACCAAAGTGTACCACGTATCTCAAAGCCCCCTGACAGACACTGTAGTGGATGCCACGG
CCAGCCCTCCCTTAGACCTGGAATGCCCCGAAGAGGCTGCAGCAAGCAAGTTCCGAATCAAATCTCCATT
TCTGGACCAGCCTGGGGCAGGTACCGGGGAAAGGCCTCCCTCCAGGCTGGATGGCATCGTGCCTCCTCCT
GGCTGTGCGGTCAGTCCCAGCCAGACCCTGATCCGAAAGTCACAGATAAGGTCGACCGGTGGCAGAGATG
GCTCATCGGAGAGGTGCCACTCCAGAAGTTCCCTCTTCAGGAGGACTGCTAGTTTTCATGAAACCAAGCA
GTCTCGCCCTTTCCGGGAGAGGAGTTTGTCAGCCCTGACTCCCCGCCAGGTCCCCGCCTACAGTTCCAGG
ATGCGGACCTGGGACCAGATGGAGGATAGATGTCGGCCTCCCAGTCGAAGTACCCACCTGCTTCCAGAGA
GACCAGAGCACTTCCAAGGGGCAGGTCGGACCAGCAGTCCTTTGGGTCCACTCTCCAAATCCTACACTGT
GGGGCATCCCAGGAGGAAACCGGACCCAGGGGATCGTCAGGCCGGATTGGTGGCAGGAGCTGAGAAAATG
GAGCCTCACCGAGCTCACAGGGGACCGTCCCCCAGTCACAGGAGTGCCTCAAGGAAGCAGTCTTCCCCCA
TTTTCCTCAAAGATAGCTACCAGAAAGTCAGTCAGCTTAGCCCTTCTCACTTCAGAAAAGATAAATGCCA
GAGCTTCCCCATCCACCCCGAGTTCGCCTTCTATGACAATACCTCTTTCCGCCTCACCGAGGCTGAGCAG
AGAATGCTGGACCTCCCAGGATACTTCGGCTCCAACGAAGAGGACGAAACCACAAGTACACTCAGTGTGG
AGAAGTTAGTGATCTAG

Translation (798 aa):
MKPMLKDFSNLLLVVLCDYVLGEAEYLLLQEPVHVALSDRTVSVGFHYLSDVNGTLRNVSVMLWEANTNR
TLTTKYLLTNQAQGTLQFECFYFKEAGDYWFVMIPEVTDNGTQVPLWEKSAFLKVEWPVFHIDLNRTAKA
AEGTFQVGVFTTQPLCLFPVDKPDMLVDVIFTDRLPEARASLGQPLEIRASKRTKLTQGQWVEFGCAPVG
VEAYVTVMLRLLGQDSVIASTGPIDLAQKFGYKLMMAPEVTCESVLEVMVLPPPCVFVQGVLAVYKEAPK
RPEERTFQVAENRLPLGERRTVFNCTLFDVGKNKYCFNFGIVKKGHFSAKECMLIQRNIVFRPPGPSPVS
PQDPVKSNNVVTVTGISLCLFIIFATVLITLWRRFGRAPKCSTPVRHNSIHSPGFRKNSDEENICELSEP
RGSFSDAGDGPRGSPGDTGIPLTYRCSASAPPEDEASGSESFQSNAQKIIPPLFSYRLAQQQLKEMKKKG
LTETTKVYHVSQSPLTDTVVDATASPPLDLECPEEAAASKFRIKSPFLDQPGAGTGERPPSRLDGIVPPP
GCAVSPSQTLIRKSQIRSTGGRDGSSERCHSRSSLFRRTASFHETKQSRPFRERSLSALTPRQVPAYSSR
MRTWDQMEDRCRPPSRSTHLLPERPEHFQGAGRTSSPLGPLSKSYTVGHPRRKPDPGDRQAGLVAGAEKM
EPHRAHRGPSPSHRSASRKQSSPIFLKDSYQKVSQLSPSHFRKDKCQSFPIHPEFAFYDNTSFRLTEAEQ
RMLDLPGYFGSNEEDETTSTLSVEKLVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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