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Report for CCDS80880.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80880.1 Public Mus musculus 8 Palld 23 108 98 CCDS HistoryNCBI Gene:72333Re-query CCDS DB by CCDS ID:80880.1Re-query CCDS DB by GeneID:72333See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80880.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000121200.8 ENSMUSP00000112374.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121200.8Link to Ensembl Protein Viewer:ENSMUSP00000112374.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121200Re-query CCDS DB by Protein ID:ENSMUSP00000112374
Original member Current member NCBI NM_001293774.2 NP_001280703.1 Accepted alive Link to Nucleotide Sequence:NM_001293774.2Link to Protein Sequence:NP_001280703.1Re-query CCDS DB by Nucleotide ID:NM_001293774Re-query CCDS DB by Protein ID:NP_001280703Link to BLAST:NP_001280703.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001280703.1 663 Q9ET54-3 663 100% 0 0

Chromosomal Locations for CCDS 80880.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 61513352 61513524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61515203 61515336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61515869 61516034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61516535 61516742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61522884 61523016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61525068 61525162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61531912 61532061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61533354 61533575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61535686 61535784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61538688 61538823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 61549571 61550046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1992 nt):
ATGAGCGCTCTGGCCTCCCGCGCTACCGCCATGCAGTCCTCCGGCTCCTTCAACTACGCGCGCCCTAAGC
AGTTCATCGCGGCGCAGAACCTGGGTCCCGCATCGGGGCTGCCCACGCCAACCTCCAGCCCCAGCTCCTC
CAGCTTGCCGTCACCATTGTCCCCCACGCCCAGGCCCTTCGGCCGCGCGCCCGGGCCGCCCTTCGTGGAA
CCCGAGGCCATGTGGGGCCCGTCCTCGCCCTCGCCGCCACCGCCGCCACCTCCGGTCTTCAGCCCCTCTG
CAGCCTACCCGGTGCCCGACGTGTTCCCACTGCCACCGCCGCCGCCACCGCTACCTAGCTCCACCTCACA
CTGCGCCTCGCCCGCCCGCTTCGGCCCCAGCCAGACGCCCGCAGCCTTCCTCAGCGCCCTGCTGCCCTCT
CAGCCACCGCCTGTCGCTGTCAACGCCCTGGGGCTGCCCAAGGGAGTCACCCCCGCGGGGTTCCCAAAGA
AGTCCAGTAGAACTGCTAGAATTGCCTCTGATGAGGAGATTCAAGGCACAAAGGATGCTGTCATCCAAGA
CCTGGAACGGAAGCTTCGCTTCAAGGAGGACCTTCTGAACAATGGCCAACCGAGGCTAACCTATGAGGAA
AGAATGGCTCGCCGCCTGCTTGGAGCCGACAGCGCAAACGTCTTCAACATCCAGGAGCCAGAGGAAACGG
CAGCCAATCAGGAGTACAAAGTCTCTAGCTGCGAGCAGAGGCTGATTAGCGAGATTGAGTACCGGCTGGA
GCGCTCCCCTGTGGATGAGTCGGGAGACGAGGTGCAGGATCCAGATGTGCCTGTGGAGAACGCAACAGCT
CCCTTCTTTGAGATGAAGCTGAAACACTACAAGATCTTTGAGGGGATGCCGGTGACTTTCACGTGTCGAG
TGGCTGGGAATCCAAAGCCAAAGATCTATTGGTTTAAAGATGGGAAGCAGATTTCTCCGAAGAGCGATCA
CTACACCATTCAGAGAGACCTTGATGGGACCTGCTCTCTCCACACCACGGCCTCTACCCTAGACGACGAT
GGGAACTACACCATCATGGCTGCCAACCCTCAGGGTCGCGTCAGTTGTACAGGAAGGCTAATGGTACAGG
CTGTCAACCAAAGAGGCCGCAGTCCCCGCTCTCCCTCAGGCCATCCTCATGCCAGAAGGCCTCGCTCTCG
ATCACGGGACAGTGGAGATGAAAACGAGCCCATTCAGGAGCGATTCTTCAGACCTCACTTCCTGCAGGCT
CCTGGAGACCTGACCGTTCAGGAAGGCAAGCTCTGCAGGATGGACTGCAAGGTCAGTGGGTTACCAACCC
CAGATCTCAGCTGGCAACTAGATGGAAAGCCCATACGCCCCGACAGTGCTCACAAGATGCTGGTCCGTGA
GAATGGGGTCCACTCCCTCATTATAGAGCCAGTCACGTCCCGGGACGCCGGCATCTACACATGTATTGCC
ACCAACAGAGCAGGACAGAACTCGTTTAACCTGGAGCTTGTGGTTGCTGCTAAGGAAGCACACAAGGCCC
CTGTGTTTATGGAGAAGCTACAGAACACGGGGGTTGCTGATGGATACCCAGTGCGGCTGGAATGCCGTGT
CTCGGGAGTGCCGCCACCTCAGATATTTTGGAAGAAAGAAAATGAATCGCTCACTCACAGCACTGAGCGA
GTAAGCATGCACCAGGATAATCATGGCTACATCTGCCTGCTCATCCAGGGAGCCACAAAGGAAGACGCTG
GGTGGTACACTGTGTCCGCCAAGAACGAAGCAGGCATTGTGTCCTGCACTGCCCGGCTGGATGTCTACAC
CCAGTGGCACCAGCAGCCACAGACCACCAAGCCAAAAAAAGTACGGCCCTCGGCCAGTCGCTACGCAGCA
CTTTCGGACCAGGGACTAGACATCAAAGCCGCTTTCCAACCTGAAGCCAGCCCATCTCACCTGACTCTGA
ACAGCGGCTTGGTAGAAAGTGAAGACCTGTGA

Translation (663 aa):
MSALASRATAMQSSGSFNYARPKQFIAAQNLGPASGLPTPTSSPSSSSLPSPLSPTPRPFGRAPGPPFVE
PEAMWGPSSPSPPPPPPPVFSPSAAYPVPDVFPLPPPPPPLPSSTSHCASPARFGPSQTPAAFLSALLPS
QPPPVAVNALGLPKGVTPAGFPKKSSRTARIASDEEIQGTKDAVIQDLERKLRFKEDLLNNGQPRLTYEE
RMARRLLGADSANVFNIQEPEETAANQEYKVSSCEQRLISEIEYRLERSPVDESGDEVQDPDVPVENATA
PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDD
GNYTIMAANPQGRVSCTGRLMVQAVNQRGRSPRSPSGHPHARRPRSRSRDSGDENEPIQERFFRPHFLQA
PGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPIRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIA
TNRAGQNSFNLELVVAAKEAHKAPVFMEKLQNTGVADGYPVRLECRVSGVPPPQIFWKKENESLTHSTER
VSMHQDNHGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDVYTQWHQQPQTTKPKKVRPSASRYAA
LSDQGLDIKAAFQPEASPSHLTLNSGLVESEDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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