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Report for CCDS80892.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80892.1 Public Mus musculus 8 Ocel1 23 108 98 CCDS HistoryNCBI Gene:77090Re-query CCDS DB by CCDS ID:80892.1Re-query CCDS DB by GeneID:77090See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80892.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110051.1 ENSMUSP00000105678.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110051.1Link to Ensembl Protein Viewer:ENSMUSP00000105678.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110051Re-query CCDS DB by Protein ID:ENSMUSP00000105678
Original member Current member NCBI NM_001293800.1 NP_001280729.1 Accepted alive Link to Nucleotide Sequence:NM_001293800.1Link to Protein Sequence:NP_001280729.1Re-query CCDS DB by Nucleotide ID:NM_001293800Re-query CCDS DB by Protein ID:NP_001280729Link to BLAST:NP_001280729.1

Chromosomal Locations for CCDS 80892.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 71371675 71371985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71372749 71372802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71372946 71372988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (408 nt):
ATGCAAATACATGCAGGTCCCGCCTCCAGGCGCGGCCGGCGGGGTCCTCTGGCCAGGCTCTCAGGCCCGG
AA
GCCACTTGCAATTCGCGCCCTGCCGCCAGGGGGCGCCAGAGAGCTGCAGCCCCACGCATGCCTGCCCC
G
GAGCGTCCGCGCTCCAGACGGCCGCAGAGCCAGCCCGGGCCGGGAGAGCTCTGCGTGAGGCCCCGGAAG
ATC
GTGTTTGCGGATGAGCTGCGCCCCCGGGAGCCACTGCACCCTGAGAAGCATCCCAGAGATCTGGGAC
CC
CGCCTCAACCCAGTACCTGACTACGAGCTAAGGAGGCTCGCATGGCAGCTCATGTCAGGAGAGAGTTT
G
AGAAGAAGCGAGGGGATCCTGGCTTCCTGGATAAGCAGGCTCGCTGTAACTACCTGA


Translation (135 aa):
MQIHAGPASRRGRRGPLARLSGPEATCNSRPAARGRQRAAAPRMPAPERPRSRRPQSQPGPGELCVRPRK
I
VFADELRPREPLHPEKHPRDLGPRLNPVPDYE
LRRLAWQLMSGESLRRSEGILASWISRLAVTT



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser