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Report for CCDS80974.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80974.1 Public Mus musculus 9 Foxred1 23 108 98 CCDS HistoryNCBI Gene:235169Re-query CCDS DB by CCDS ID:80974.1Re-query CCDS DB by GeneID:235169See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80974.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000127996.7 ENSMUSP00000118037.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000127996.7Link to Ensembl Protein Viewer:ENSMUSP00000118037.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000127996Re-query CCDS DB by Protein ID:ENSMUSP00000118037
Original member NCBI NM_001291448.1 NP_001278377.1 Updated not alive Link to Nucleotide Sequence:NM_001291448.1Link to Protein Sequence:NP_001278377.1Re-query CCDS DB by Nucleotide ID:NM_001291448Re-query CCDS DB by Protein ID:NP_001278377
Current member NCBI NM_001291448.2 NP_001278377.1 Accepted alive Link to Nucleotide Sequence:NM_001291448.2Link to Protein Sequence:NP_001278377.1Re-query CCDS DB by Nucleotide ID:NM_001291448Re-query CCDS DB by Protein ID:NP_001278377Link to BLAST:NP_001278377.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001278377.1 487 Q3TQB2-1 487 100% 0 0

Chromosomal Locations for CCDS 80974.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 35204869 35205123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35205305 35205409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35205589 35205718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35205860 35206020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35206223 35206299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35207479 35207580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35207892 35207986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35209038 35209156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35209416 35209529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35209945 35210165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35210807 35210891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1464 nt):
ATGTTTCGCAGAGCGCTGCGTCTTGGCTTGGGCCCGGGCCTCCCATACCGGGGGCTACGCACACGCAAAG
GAGGCTTTACTCTGGACTGGGATGCAAAGGTGTCTGACTTTAAGAAGAAGGTTGATTCCATCCTGCCTGG
AAAGAAATATGAAGTGCTGTATGACACCAGCCACCTGCCCCCAGAACAGGCGGATGTGGTCATCATAGGA
GGTGGGATTCTTGGTCTGTCTGTGGCCTTTTGGCTGAAGAAGCTGGAGAGTAGAAGAGGTGCCATTCGGG
TGCTGGTGGTGGAGCAGGACCACACGTATTCACGGGCTTCCTCCACAGGGCCTTCTGTGGGCGGGATTTG
GCAGCAGTTTTCCGTGCCTGAGAATGTCCAGCTCTCACTCTTTTCAATCAACTTTCTCCGGAACATAAAT
GAGTACCTGGCTGTGGTGGATGCTCCTCCTGTGGAACTTCAGTTCAACCCTTCCGGCTGTCTCTTGCTAG
CTTCAGAAAAGGATGCTGCCACCTTGGAAAACAATGTGAAAATGCAAAGGCAGGAAGGAGCCAAAGTCTG
CCTGATGTCTCCTGAGCAGCTGCAGACCAAGTTTCCCTGGATAAACGTAGAAGGAGTAGCTCTGGCGTCT
TATGGGTTGGAGGATGAAGGTTGGTTTGATGCCTGGTCTTTGCTCCAGGGTCTTCGTCGAAAGGTCCAGT
CAATGGGAGTCTTTTTCTGCCAGGGAGAGGTGACACGTTTCATCACTTCATCTACCCCAATGAAGACCCC
AACTGGGGAACATGTAGTCTTGAGAAGGATCAACAATGTCCATGTGAAAATGGACAAGAGCCTGGAGTAT
CAACCAGTAGAATGTGCTGTAGTGATCAATGCTGCAGGAGCCTGGTCTGGGAAAATTGCAGAGCTGGCTG
GTGTTGGGAAGGGACTTCCTGGCACCCTCCAGGGCACCAAGCTACCTGTGGAGCCAAGGAAAAGGTATGT
GCACTTATGGCACTGCCCACAGGGACCAGGTCTGGAGACACCGTTGGTTGCAGACATTAGTGGAGTCTAT
TTCCGACGGGAAGGATTGGGCAGCAACTACCTAGGTGGCTGTAGTCCTACTGAGGAGGAAGAACCAGACC
CAACAAATCTGAATGTGGACCATGACTTCTTCCAGAACAAAGTGTGGCCTCATTTGGTCCAGAGGGTGCC
ATCTTTTAAGACTCTGGAGGTACAGAGTGCCTGGGCTGGTTATTATGACTACAATACTTTTGACCAGAAT
GGCGTGGTGGGCCCCCACCCACTAGTTGTCAACATGTACTTTGCTACGGGCTTCAGTGGTCGTGGGCTTC
AGCATGCACCTGGCATCGGACGCGCTGTGGCAGAAATCATGCTAGAGGGTCACTTTAAGACCATCGACAT
GAGCCCCTTCCTCTTTACCCGCTTTTACTTAGGAGAGAAGTTACAGGAGTACAATATCCTCTGA

Translation (487 aa):
MFRRALRLGLGPGLPYRGLRTRKGGFTLDWDAKVSDFKKKVDSILPGKKYEVLYDTSHLPPEQADVVIIG
GGILGLSVAFWLKKLESRRGAIRVLVVEQDHTYSRASSTGPSVGGIWQQFSVPENVQLSLFSINFLRNIN
EYLAVVDAPPVELQFNPSGCLLLASEKDAATLENNVKMQRQEGAKVCLMSPEQLQTKFPWINVEGVALAS
YGLEDEGWFDAWSLLQGLRRKVQSMGVFFCQGEVTRFITSSTPMKTPTGEHVVLRRINNVHVKMDKSLEY
QPVECAVVINAAGAWSGKIAELAGVGKGLPGTLQGTKLPVEPRKRYVHLWHCPQGPGLETPLVADISGVY
FRREGLGSNYLGGCSPTEEEEPDPTNLNVDHDFFQNKVWPHLVQRVPSFKTLEVQSAWAGYYDYNTFDQN
GVVGPHPLVVNMYFATGFSGRGLQHAPGIGRAVAEIMLEGHFKTIDMSPFLFTRFYLGEKLQEYNIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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