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Report for CCDS82919.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82919.1 Public Homo sapiens 4 LIMCH1 24 110 108 CCDS HistoryNCBI Gene:22998Re-query CCDS DB by CCDS ID:82919.1Re-query CCDS DB by GeneID:22998See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82919.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000503057.6 ENSP00000425631.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000503057.6Link to Ensembl Protein Viewer:ENSP00000425631.1Re-query CCDS DB by Nucleotide ID:ENST00000503057Re-query CCDS DB by Protein ID:ENSP00000425631
Original member Current member NCBI NM_001330672.2 NP_001317601.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001330672.2Link to Protein Sequence:NP_001317601.1Re-query CCDS DB by Nucleotide ID:NM_001330672Re-query CCDS DB by Protein ID:NP_001317601Link to BLAST:NP_001317601.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317601.1 1467 Q9UPQ0-3 1467 99.9318% 0 1

Chromosomal Locations for CCDS 82919.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 41605996 41606004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41613466 41613661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41619188 41619440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41620424 41620690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41626708 41627010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41629492 41629734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41631148 41631477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41632749 41632867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41632977 41633085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41633548 41633808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41638932 41638967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41644500 41644626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41646123 41646280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41646485 41646893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41650393 41650608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41661420 41661510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41662821 41662984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41666561 41666666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41671554 41671594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41676382 41676462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41680006 41680098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41680955 41681059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41682333 41682460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41684397 41684518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41685710 41685830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41687840 41687917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41689527 41689635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41692282 41692384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41697160 41697185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4404 nt):
ATGCGAAAGGACACTGATGACATTGAAAGTCCTAAACGCAGTATCCGAGACAGTGGCTACATCGACTGCT
GGGATTCCGAGCGCAGCGACTCCCTCTCTCCTCCTCGCCACGGCAGAGATGATTCCTTCGACAGCCTGGA
TTCCTTTGGCTCTCGCTCTCGGCAGACGCCTTCACCAGATGTAGTCCTCAGGGGAAGCAGCGATGGGAGA
GGAAGCGACTCTGAATCCGACTTGCCTCATCGGAAGCTGCCAGATGTGAAGAAGGATGACATGTCTGCAC
GGCGGACTTCCCATGGTGAGCCGAAATCAGCAGTGCCTTTTAACCAGTACCTCCCGAACAAAAGCAATCA
GACGGCCTACGTCCCCGCGCCTCTGAGAAAGAAGAAAGCAGAGAGAGAGGAATACCGCAAGAGCTGGAGT
ACCGCCACCTCCCCGCTGGGTGGGGAGAGGCCCTTCAGCTTTCCTGAAACGATAGAGGAAGAGGGGAGTG
AAGTGGGGTCTGCTGGTGAAGACAACCCAGCTGGCCAAATGAATCCTGGTTGGAAGCCTTCCGATGGTGG
GTGTGAATTACCTGACGGCAGTGGTAAGGAGCACCCTTCTTCAGACGGGGCTGTGGTGGCACCAGCTCCC
AAGTCTGAAGAAAAAGATGCTGCTGAGATCCAAAAGCGCAAAAGGCTAGAGCAAGCTGGAATCAAGGTCA
TGCCAGCAGCACAGCGCTTTGCCAGTCAAAAACAATTAAGTGAAGAGAAAGAAGCTATTCGTGATATTGT
CCTTCGCAAAGAAAACTCTTTCCTGACCCACCAACATGGCAACGATTCAGAGGCAGAAGGTGAAGTTGTG
TGTCGACTGCCTGATCTTGAGAAGGATGACTTTGCTGCAAGGAGAGCAAGGATGAACCAAACCAAGCCAA
TGGTGCCATTAAATCAACTCCTCTATGGCCCTTATCCAAAGAAAGGGGCAGAGAAATCAGATGGCAGCAA
ACAGCTCTCAAAGGGAATCTCAAAAAAAAGAAGTCTAGAATATAAAAGAAACCAGGGCCACACAGAAGAG
GTGAAGTTGATAGTGACCTGTAACATGAGGGCTCAGGAAAGTGAACCTGTGGAAGGAGGACTCAGGAAGG
TGCCAGATCTTCACAAGGATGACCTGGCCCAGCAGAGAATTCAGGGCAGCCTTGCCCCTCACCGCGAGCC
CCCGAGCTTCATTACGCTCTCCAACATAACAGAAGCTGACTTGGAGACGTGGGAGAGACTCAAAGTGTCA
GAAAAGGCGAGGGATGGAGATGTTCAGCACATCTGTGCTTCTGAGCCTTCCCCAGAAATTAAAGCAGAAA
CTGCCATTCGTGATGACTTTGCCAACCGCAAAGCAAGGGCCTCTAAGAAAGCTTCCAGCCCCAGGCAAAA
GTTTGTGCACTTTGGGCCAGTGACGGAGCTAGATCAGCAGAAATGGAAGCGGCTTAGCATTGGCAAGGCT
GGGCCTAGAGAGGATGAAGAAGAAGTCATCTGTCATGGCAGCAAGATTCAAATGGACTCTGTGTCTCCTG
TCTCAGCGGCCACTTCCAGCTTAAAGGGCCACCAAATATTTAATCGACAAAATGACTGCAGAACAATGAA
TTGTGGCCGAGGTGACTATTGCAGAAGGGCCTCGTGGCTGGCTCCTGTGCCGGAGTCTCAGGAAGAGTGG
GTCTGCAGTTTGGGCGAGTGCCCGAGGGGGACAGAGGAAGTTACATCCAAACAGCTGCCACAGGATGGCA
AAGAAGAAACAGAAAGCGCTCCAAGAGATTCTGAGAGGCTGTCAAAGGCAGAAAGATCAGAGGACAGCAG
CCAGCCACTGGTGTGTCCTCTGGCCTCTGAGTGTGAGGCTTCAGGGACAGAAGAGAAGTTGGAGAAGATG
ACAGCTCCTGCCTGGAGTGGCAGTGGACTGAAAGGCCAGCGAAAGTTGGATGATTCACGAAAAGATGACA
TGATGGCCAGGAGAACTGGGATGTCCCTTAGACACACTGGATCCAACCCAAACCAGTTCCTTCCAGTTCC
ATTTGCAAAGCAACAGGATGTGGAAGAATCTTCTAAAGGTCTACCCATGAAAGATCAGAGATACGGTCCG
AGAACTCCTGTGTCTGATGACGCAGAGAGCACCAGCATGTTTGACATGCGGTGTGAGGAGGAGGCCGCGG
TGCAGCCGCACAGCAGGGCCCGCCAGGAGCAGCTGCAGCTGATAAATAACCAGCTGAGGGAAGAGGACGA
CAAATGGCAAGATGACCTGGCTCGTTGGAAGAGTCGTAGAAGAAGTGTTTCTCAGGACTTAATCAAGAAA
GAGGAAGAAAGGAAAAAAATGGAGAAGTTACTGGCTGGAGAAGATGGGACAAGTGAACGAAGGAAAAGCA
TCAAAACCTACAGAGAAATTGTTCAAGAAAAAGAGCGGAGAGAGAGAGAGCTGCATGAAGCATATAAGAA
CGCTCGGTCCCAGGAGGAGGCAGAGGGGATCCTTCAACAGTACATTGAGAGGTTCACCATCAGTGAGGCT
GTTCTCGAACGCTTGGAGATGCCAAAAATTCTGGAAAGAAGCCATTCAACAGAGCCAAATTTATCCTCCT
TCCTGAATGACCCCAATCCCATGAAATACCTGCGGCAACAGTCACTGCCTCCACCCAAATTCACTGCCAC
TGTTGAAACCACCATTGCTCGTGCCAGTGTTCTGGATACCAGCATGTCAGCAGGCAGTGGGTCTCCAAGC
AAAACTGTCACTCCCAAAGCAGTGCCTATGCTGACACCCAAGCCTTACTCCCAGCCCAAAAATTCTCAAG
ATGTTCTGAAGACCTTTAAGGTAGACGGGAAAGTCAGTGTGAATGGAGAGACGGTTCATAGAGAGGAGGA
GAAGGAAAGAGAGTGTCCCACGGTGGCACCTGCCCACTCCTTAACCAAATCCCAGATGTTTGAAGGTGTG
GCCAGAGTGCACGGGTCTCCACTGGAGCTGAAACAAGACAACGGTAGCATCGAGATCAACATAAAGAAGC
CAAACTCTGTTCCCCAAGAGCTCGCAGCAACCACTGAGAAAACGGAACCGAATAGTCAAGAGGACAAGAA
TGATGGTGGAAAATCAAGAAAAGGGAATATAGAACTTGCCTCATCAGAACCACAGCATTTTACAACAACT
GTGACTCGATGCAGCCCGACCGTGGCCTTTGTGGAATTTCCCTCCAGCCCCCAGCTGAAGAATGATGTGT
CGGAAGAAAAAGACCAGAAGAAACCAGAAAATGAAATGAGTGGAAAGGTGGAGTTGGTGCTGTCACAAAA
GGTGGTAAAGCCAAAATCTCCAGAACCCGAAGCAACGCTGACATTTCCATTTCTGGACAAAATGCCTGAA
GCCAACCAACTACATTTGCCAAATCTCAATTCTCAAGTGGATTCTCCAAGCAGTGAGAAGTCACCTGTTA
TGACACCTTTTAAGTTCTGGGCATGGGACCCAGAAGAGGAGCGCAGGCGACAGGAAAAATGGCAACAGGA
ACAGGAACGTTTGCTCCAGGAGAGATACCAGAAGGAGCAGGACAAGCTGAAAGAAGAGTGGGAAAAGGCC
CAAAAGGAGGTGGAAGAGGAAGAACGCAGATACTATGAGGAGGAGCGTAAGATAATTGAAGACACTGTGG
TTCCATTTACTGTTTCTTCAAGTTCCGCTGACCAGCTGTCTACCTCTTCCTCCATGACTGAAGGCAGTGG
GACAATGAATAAGATAGACCTGGGAAACTGTCAAGATGAAAAACAAGACAGAAGATGGAAGAAATCATTC
CAGGGAGATGACAGTGACTTATTGCTGAAGACTAGGGAAAGTGATCGACTGGAGGAGAAGGGCAGCCTAA
CTGAAGGGGCCTTGGCTCATTCTGGGAACCCTGTATCAAAAGGAGTCCATGAAGACCATCAGCTGGATAC
CGAGGCTGGGGCCCCACACTGTGGAACAAACCCACAGCTTGCTCAGGATCCATCCCAGAATCAGCAGACA
TCAAATCCAACGCACAGTTCAGAAGATGTGAAGCCAAAAACCCTCCCGCTGGATAAAAGCATTAACCATC
AGATCGAGTCTCCCAGTGAAAGGCGGAAGAAAAGTCCCCGAGAGCACTTCCAGGCTGGGCCTTTCTCTCC
CTGTTCTCCCACCCCTCCCGGTCAGTCACCAAACAGGTCTATAAGTGGAAAGAAGCTGTGCTCTTCCTGT
GGGCTTCCTTTGGGTAAAGGAGCTGCAATGATCATCGAGACCCTCAATCTCTATTTTCACATCCAGTGTT
TCAGGTGTGGAATTTGTAAAGGCCAGCTTGGAGATGCAGTGAGTGGGACGGATGTTAGGATTCGAAATGG
TCTCCTGAACTGTAATGATTGCTACATGCGATCCAGAAGTGCCGGGCAGCCTACAACATTGTGA

Translation (1467 aa):
MRKDTDDIESPKRSIRDSGYIDCWDSERSDSLSPPRHGRDDSFDSLDSFGSRSRQTPSPDVVLRGSSDGR
GSDSESDLPHRKLPDVKKDDMSARRTSHGEPKSAVPFNQYLPNKSNQTAYVPAPLRKKKAEREEYRKSWS
TATSPLGGERPFSFPETIEEEGSEVGSAGEDNPAGQMNPGWKPSDGGCELPDGSGKEHPSSDGAVVAPAP
KSEEKDAAEIQKRKRLEQAGIKVMPAAQRFASQKQLSEEKEAIRDIVLRKENSFLTHQHGNDSEAEGEVV
CRLPDLEKDDFAARRARMNQTKPMVPLNQLLYGPYPKKGAEKSDGSKQLSKGISKKRSLEYKRNQGHTEE
VKLIVTCNMRAQESEPVEGGLRKVPDLHKDDLAQQRIQGSLAPHREPPSFITLSNITEADLETWERLKVS
EKARDGDVQHICASEPSPEIKAETAIRDDFANRKARASKKASSPRQKFVHFGPVTELDQQKWKRLSIGKA
GPREDEEEVICHGSKIQMDSVSPVSAATSSLKGHQIFNRQNDCRTMNCGRGDYCRRASWLAPVPESQEEW
VCSLGECPRGTEEVTSKQLPQDGKEETESAPRDSERLSKAERSEDSSQPLVCPLASECEASGTEEKLEKM
TAPAWSGSGLKGQRKLDDSRKDDMMARRTGMSLRHTGSNPNQFLPVPFAKQQDVEESSKGLPMKDQRYGP
RTPVSDDAESTSMFDMRCEEEAAVQPHSRARQEQLQLINNQLREEDDKWQDDLARWKSRRRSVSQDLIKK
EEERKKMEKLLAGEDGTSERRKSIKTYREIVQEKERRERELHEAYKNARSQEEAEGILQQYIERFTISEA
VLERLEMPKILERSHSTEPNLSSFLNDPNPMKYLRQQSLPPPKFTATVETTIARASVLDTSMSAGSGSPS
KTVTPKAVPMLTPKPYSQPKNSQDVLKTFKVDGKVSVNGETVHREEEKERECPTVAPAHSLTKSQMFEGV
ARVHGSPLELKQDNGSIEINIKKPNSVPQELAATTEKTEPNSQEDKNDGGKSRKGNIELASSEPQHFTTT
VTRCSPTVAFVEFPSSPQLKNDVSEEKDQKKPENEMSGKVELVLSQKVVKPKSPEPEATLTFPFLDKMPE
ANQLHLPNLNSQVDSPSSEKSPVMTPFKFWAWDPEEERRRQEKWQQEQERLLQERYQKEQDKLKEEWEKA
QKEVEEEERRYYEEERKIIEDTVVPFTVSSSSADQLSTSSSMTEGSGTMNKIDLGNCQDEKQDRRWKKSF
QGDDSDLLLKTRESDRLEEKGSLTEGALAHSGNPVSKGVHEDHQLDTEAGAPHCGTNPQLAQDPSQNQQT
SNPTHSSEDVKPKTLPLDKSINHQIESPSERRKKSPREHFQAGPFSPCSPTPPGQSPNRSISGKKLCSSC
GLPLGKGAAMIIETLNLYFHIQCFRCGICKGQLGDAVSGTDVRIRNGLLNCNDCYMRSRSAGQPTTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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