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Report for CCDS83141.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83141.1 Public Homo sapiens 6 SOD2 24 110 108 CCDS HistoryNCBI Gene:6648Re-query CCDS DB by CCDS ID:83141.1Re-query CCDS DB by GeneID:6648See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 83141.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000546087.5 ENSP00000442920.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000546087.5Link to Ensembl Protein Viewer:ENSP00000442920.1Re-query CCDS DB by Nucleotide ID:ENST00000546087Re-query CCDS DB by Protein ID:ENSP00000442920
Original member Current member NCBI NM_001322817.2 NP_001309746.1 Accepted alive Link to Nucleotide Sequence:NM_001322817.2Link to Protein Sequence:NP_001309746.1Re-query CCDS DB by Nucleotide ID:NM_001322817Re-query CCDS DB by Protein ID:NP_001309746Link to BLAST:NP_001309746.1
Original member Current member NCBI NM_001322819.2 NP_001309748.1 Accepted alive Link to Nucleotide Sequence:NM_001322819.2Link to Protein Sequence:NP_001309748.1Re-query CCDS DB by Nucleotide ID:NM_001322819Re-query CCDS DB by Protein ID:NP_001309748Link to BLAST:NP_001309748.1
Original member Current member NCBI NM_001322820.2 NP_001309749.1 Accepted alive Link to Nucleotide Sequence:NM_001322820.2Link to Protein Sequence:NP_001309749.1Re-query CCDS DB by Nucleotide ID:NM_001322820Re-query CCDS DB by Protein ID:NP_001309749Link to BLAST:NP_001309749.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001309746.1 176 P04179-4 176 100% 0 0
NP_001309748.1 176 P04179-4 176 100% 0 0
NP_001309749.1 176 P04179-4 176 100% 0 0

Chromosomal Locations for CCDS 83141.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 159682493 159682638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 159684854 159685033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 159688126 159688242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 159692661 159692748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (531 nt):
ATGCAGCTGCACCACAGCAAGCACCACGCGGCCTACGTGAACAACCTGAACGTCACCGAGGAGAAGTACC
AGGAGGCGTTGGCCAAGGGAGATGTTACAGCCCAGATAGCTCTTCAGCCTGCACTGAAGTTCAATGGTGG
TGGTCATATCAATCATAGCATTTTCTGGACAAACCTCAGCCCTAACGGTGGTGGAGAACCCAAAGGGGAG
TTGCTGGAAGCCATCAAACGTGACTTTGGTTCCTTTGACAAGTTTAAGGAGAAGCTGACGGCTGCATCTG
TTGGTGTCCAAGGCTCAGGTTGGGGTTGGCTTGGTTTCAATAAGGAACGGGGACACTTACAAATTGCTGC
TTGTCCAAATCAGGATCCACTGCAAGGAACAACAGGCCTTATTCCACTGCTGGGGATTGATGTGTGGGAG
CACGCTTACTACCTTCAGTATAAAAATGTCAGGCCTGATTATCTAAAAGCTATTTGGAATGTAATCAACT
GGGAGAATGTAACTGAAAGATACATGGCTTGCAAAAAGTAA

Translation (176 aa):
MQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGE
LLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWE
HAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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