NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS83434.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83434.1 Public Homo sapiens 9 SPACA9 24 110 108 CCDS HistoryNCBI Gene:11092Re-query CCDS DB by CCDS ID:83434.1Re-query CCDS DB by GeneID:11092See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83434.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356311.10 ENSP00000348659.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000356311.10Link to Ensembl Protein Viewer:ENSP00000348659.5Re-query CCDS DB by Nucleotide ID:ENST00000356311Re-query CCDS DB by Protein ID:ENSP00000348659
Original member Current member EBI ENST00000372136.7 ENSP00000361209.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372136.7Link to Ensembl Protein Viewer:ENSP00000361209.3Re-query CCDS DB by Nucleotide ID:ENST00000372136Re-query CCDS DB by Protein ID:ENSP00000361209
Original member Current member NCBI NM_001316897.2 NP_001303826.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001316897.2Link to Protein Sequence:NP_001303826.1Re-query CCDS DB by Nucleotide ID:NM_001316897Re-query CCDS DB by Protein ID:NP_001303826Link to BLAST:NP_001303826.1
Original member Current member NCBI NM_001316898.2 NP_001303827.1 Accepted alive Link to Nucleotide Sequence:NM_001316898.2Link to Protein Sequence:NP_001303827.1Re-query CCDS DB by Nucleotide ID:NM_001316898Re-query CCDS DB by Protein ID:NP_001303827Link to BLAST:NP_001303827.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001303826.1 222 Q96E40-1 222 100% 0 0
NP_001303827.1 222 Q96E40-1 222 100% 0 0

Chromosomal Locations for CCDS 83434.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 132883948 132884091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 132887369 132887571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 132888290 132888611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (669 nt):
ATGAATGAGGTGAAAGAATCCCTTCGCAGCATCGAGCAGAAGTACAAGCTCTTCCAGCAGCAGCAGCTCA
CC
TTCACCGCCGCTCTGGAGCACTGCAGGGAGAACGCCCACGACAAGATCCGGCCCATCTCCAGCATTGG
A
CAGGTGCAGAGCTACATGGAACACTACTGCAACAGCTCCACAGACCGGCGGGTTCTGCTCATGTTCCTG
GAC
ATCTGTTCAGAGCTGAATAAGCTCTGCCAGCACTTTGAGGCCGTGCACTCTGGCACCCCAGTCACCA
AC
AACCTCCTGGAGAAATGCAAAACCCTCGTTAGCCAAAGCAACGACTTAAGCAGCCTCAGAGCAAAATA
C
CCTCATGATGTGGTGAACCACCTCAGCTGTGACGAGGCCCGGAACCACTACGGCGGCGTGGTCAGCCTC
ATC
CCCCTCATCCTAGACTTAATGAAAGAATGGATCGCCCACTCCGAGAAGTTGCCGCGCAAGGTGCTGC
AG
CACGTGAGTGAGCCCCAGGCGCACCAGGAGAGCACCAGGGGAGCCGCTCGTCCTGCCCAGGCCATAGG
G
ACCCAGCCCAGGGCCACTAAACACAAGTGTAGACAGCTCACAAAAGCCAGCCTCAAACCCAGGGGATGT
TCA
AAACCACCCTGGAGGCCTCCTGGTGGGAAATTGTAA


Translation (222 aa):
MNEVKESLRSIEQKYKLFQQQQLTFTAALEHCRENAHDKIRPISSIGQVQSYMEHYCNSSTDRRVLLMFL
D
ICSELNKLCQHFEAVHSGTPVTNNLLEKCKTLVSQSNDLSSLRA
KYPHDVVNHLSCDEARNHYGGVVSL
I
PLILDLMKEWIAHSEKLPRKVLQHVSEPQAHQESTRGAARPAQAIGTQPRATKHKCRQLTKASLKPRGC
S
KPPWRPPGGKL




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser