NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS84158.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84158.1 Public Mus musculus 14 Lmo7 23 108 98 CCDS HistoryNCBI Gene:380928Re-query CCDS DB by CCDS ID:84158.1Re-query CCDS DB by GeneID:380928See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84158.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000159314.7 ENSMUSP00000124349.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159314.7Link to Ensembl Protein Viewer:ENSMUSP00000124349.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159314Re-query CCDS DB by Protein ID:ENSMUSP00000124349
Original member NCBI NM_001347628.1 NP_001334557.1 Updated not alive Link to Nucleotide Sequence:NM_001347628.1Link to Protein Sequence:NP_001334557.1Re-query CCDS DB by Nucleotide ID:NM_001347628Re-query CCDS DB by Protein ID:NP_001334557
Current member NCBI NM_001347628.2 NP_001334557.1 Accepted alive Link to Nucleotide Sequence:NM_001347628.2Link to Protein Sequence:NP_001334557.1Re-query CCDS DB by Nucleotide ID:NM_001347628Re-query CCDS DB by Protein ID:NP_001334557Link to BLAST:NP_001334557.1

Chromosomal Locations for CCDS 84158.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 101884200 101884414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101885291 101885572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101886937 101887656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101888677 101888706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101896467 101896584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101898557 101898699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101900071 101900644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101902064 101902369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101910766 101910880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101911999 101912160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101913240 101913346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101914277 101914337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101915688 101915744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101917631 101917656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101917940 101918044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101918612 101918704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101919209 101919651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101920489 101920554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101922097 101922149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101926096 101926309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101929176 101929451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101932570 101932672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 101933896 101933988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4362 nt):
ATGCAGGATTACAACAAAGATGATATGTCCTACCGAAGGATTTCAGCCATTGAGCCAAAGTCAGCTCTCC
CGTTCAATCGTTTCTTGCCGAACAAAAGCAAGCAGCCGTCCTATGTGCCAGCACCTTTGAGGAAGAAGAG
GCCAGACAAACACGAGGATAACAGGAGGAGCTGGGCAAGCCCGGTCTACACAGAAACAGACGGAACATTT
TCAAGTACCCAGAGGAGAACCTGGGGTCCCAAGATGGAGACCTGGCACACAGTCCAAGAAACTTCCACCT
CTTCTTGGTGTGTAGAAGAGGAAGAGGAAAAGCTCACGCGCATGCCCAACATTGTGAAGGATGATCTGTA
TGTGCGGAAGCTTAGCCCCGTCATGCCAAGTCCAGGGAGCTCTTTTGATCAGTTCCTTCCCAAATGTTGG
ACTCCAGAAGATATGAACTGGAAAAAAATTAAAAGAGAGACTTATAAGCCATGGTATAAGGAATTTCAGG
GATTCAGTCAGTTTTTATTGCTTCAGGCCCTCCAAACCTACTCTGATGACATCTTGTCCTCGGAAACAAG
TGTCAAACTCGATCCTACCTCTGGCCCCAGGCTCATAACTCGCAGGAAGAATCGCTCTCCCGCACCAGGC
TATCGAGCCCATGACCTTGAGCTGCCAGCCCTAGATCCCGACTTAGAAAATGATGATTTCTTTGTCAGAA
AAACAGGGGCTTTCCATGCAAATCCGTGTGTCCTTCGAGCCTTTGAAGACTTTAGAAGTTTCTCGGAGCC
AGACGATGCCGTGGAACGAGATATAATTTTGCAGTGTCGGGAAGGTGAACTCGTACTTCCAGATTTAGAA
AAGGATGATATGATTGTCCGCAGGATTCCAGCTCAGAAGAAAGAAGTGCCCCTTTCTGGGGCCCCGGATA
GGTACCAGCCAGTCCCTTTCCCTGAACCCTGGACCCTACCTCCAGAAATCCAAGCGAAGTTTCTCTCTGT
GCTCGAAAGGACACGCCCACCCAAAGAACAAAGCAGCGGCTGTAGAGTGTTAGTCCCTTCCTATCGACAG
AAGAAAGACGACATGTTGGCTCGCAAGATCCAGTCTTGGAAGCTGGGGACTGCTGTACCTCCCATCAGTT
TCAAGCCTGGCCCCTGCAGCGAGGCCGACCTGCAGAAGTGGGAGGCCATCTGGGAGGCCAGCAGGCTTAG
GCACAGGAAGCGGCTGATGGTTGAGAGACTCTTTCAAAAGATCTATGGTGAGAATGGGAGCAAGTCCATG
AGCGATGTCAGCGCAGAGGATGTTCAGAACCTGCGTCAGGTGCGCTACGAGGAGATGCAGAAAATAAAAT
CCCAGCTGAAAGAACAAGATCAGAAATGGCAGGATGACCTTGCAAAATGGAAAAACCGCCGGAAGAGTTA
CACTTCAGATCTGCAGAAGAAAAAGGAAGAGAGGGAAGAGATTGAGAAGCAGGCACTGGAGAAGTCTGAC
CGCAGCTCCAAGACATTTAGGGAAATGCTGCAGGACAGGGAATCTCGAGGTTCTACAGTTACGTCTTGGA
GGAGGACCTATTCCTCTGATGACATCCTCGATGATGGAGTGCTCCCTCCTACAGTGACTCTGTCAGAAAC
TAGTTACCAGAGCGAGAGACTAGAAGATGAGGCAAGAGCGCATCCTGCTGAGATGCCCAAAGAAGATTCC
ACAACATTTGCAAATAGAGAGGACAGTGTAGTAGCTGAGACTCAGCTTGCTTCTCACAGTCCTGAAGAGC
AACGTCTGGCCCCTTCTCCTTCTGAGGAACCGCGCCAGGCCTCTGGATCTTCTGCAGAACCGCACCAGGC
CCCGTTGCTGTCCACAGAACCACGCCGGACCCCTTTGCCTTCCGAGGAACCACACCAGGCCTCTCTATCT
TCTACACTACAGCGTCCATCCTCACTCTCTTCTCAGCAGTCATGGAGTACAAGAGCAGAGTCCACTCGGA
TTTCAGCTTCTCTCCCTAGAAGTTACCAGAGAACCGATACAGCCAGGTTAACATCTGTGGTCACAGCGAG
ACCTTTTGGCACATCTTCAAGGGGAATCTCCTCACTGCCCAGATCCTACACGATGGATGATGGCTGGAAA
TACAACGGAGATGTTGAAGTTGTCAAGAGAGAGCAACTCGATTTGGGCAGAGCCACTGGCCCGAAGCCTG
ACTCCAGCCACTTTATTTCGGGCTCAGCCAGTGAGAAGGAGGTCATAGCCACAGAAGATGTGGCAAGCTT
GTCCTCTCCCACACTCCCTTCCTCATCTCTCTCCCACGACCGGGCAGTCTCTTCCAAAGCCACGTTCTCA
TCAATGTCTGGTTTGGATTCAGTGTCTGACTCTGGAGAAGGAAGAGGCTCACCATTGAGGGAAGTTTCCA
GGTCCCTGGATCAGTTCAGCGATATGAGAGTCAGCATAAACCAGACGCCCGGGAACAAACCTGTCTTTGG
GTTTACGATAAAATGGGATATTTCTGGGATCTTCGTAGCATCAGTCGAACAAGGTAGCCCAGCAGAATTT
TCTCAGCTGCAGGTAGATGATGAAATTCTTGCCATCAATAACACCAAGTTTTCATATAAGGATACAAAAA
AGTGGGAGGAAGTTATGGCAAACGCCCAAGAAACTGGAAACTTAGTGATGGACGTCCGGCGTTACGGAAA
GTCTGGTTCATCTGAAACAAAGTGGATCGATACAACATCAGGAATTTACAACTCAGACAAGTCTTCAAGT
TTATCAGTCACAACTGATTTCTCTGAAAGCCTTCAGAGTCCTTATACTGAATCCAAAGAAGTCAATGGAA
TTCACGAGGAAAGTAACCCCTTTGATTCAAAAGCATCAGAATCCATTTCTTTGAAAAATTTAAAAAGGCG
ATCACAATTTTTTGAACAAGGAAGCTCGGATTCTGTGGCCCCCGATCTTCCAGTTCCAACCCTCAGTGCC
CCGAGTCGCTGGGCTTGGGATCAAGAGGAGGAGAGACGGAGGCAGGAGCGGTGGCAGAAAGAGCAAGATC
GCCTATTGCAGGAAAAATACCAGCGTGAGCAGGAGAAGCTGAGGGAGGAGTGGCAGAGAGCCCAACAGGA
GGCGGAGAGAGAGAATTCCAAGTACCTGGATGAGGAGCTGATGGTCCTAAATTCCAACAGCATTTCTCTG
ACCTCCCGGGAGCCTGTGGCCGCCACCTGGGAAGCCACGTGGAGTGAAGGGTCCAAGTCTCTGGACAGCG
AAGGCACCCGAGCGGGAGAGGAGGACAGGGGACAGCTGGAAGACGATGCTGTGTATGAGGACCAAAGTCA
GAAGCTGCAGGAACTTGAGCAGGAGAAGAAACGGAAGGAGCAAGAGGCTCAGGAAGAGGAGCGCCGCAAG
CAGCGGGAGGCCCAGGCCTGGGCAGAGGCAGAAGCTAAGGCTTGGGCGGAGGCCCAGGCTCGGGCAGAGG
CAGAAGCTAAGGCTCGGGCGGAGGCCCAGGCCCGGGCAGAGGCTGAGGCTCAAAAACGAGCTGAAGCTCA
GAAGCTCCAGGCAGAGAGGGAACGTGAAACGTCCGTCAAAATATACCAGTACCGAAGGCCCATTGATTCC
TACGACCTACCAAAGAGAGAAGACGACACTTCAGGGATGCTTCCAACTGACAGGAGTAAATCAAGATCTA
CTACGGAACTAAATGACCCCCTCATAGAGAAAAATGGAAGCAGCAAATATTCAGAGAGAATTGGGGCCAC
TAGCTTTTCACATAGGAGTTCTAAGAAGGATCAAGCCCCCTCAGAAGCAGAGTTGGAGAGACAGCAAATC
CTTCAGGAAATGAGGAAGAGAACATCTCTCCACAATGACAACAGCTGGATCCGACAGCGCAGCGCCAGTG
TGAACAAGGAGCCCATCTGCCTGCCTGGGATCATGAGGAGAGGGGAGTCTCTGGACAATCTGGATTCCCA
GCGGCCGGGTTCTTGGAGGCAGTCCCCTTGGCACAGCCAGCCTGCCGGGGTCTATGCGTCTTCCTCTGTC
CAGGACTTCAGTCGCCCCCCACCTCAGCTGTTGTCTACATCAAACCGTGCCTACATGCGGAACCCATCCT
CTGCGGTGCCACCTCCAGCCGGCTCTGTGAAGACCTCCCCAGGGTCTCCCTCTCCACGCAGCCATTCCCC
TTCCATGTCACAGTCAGGCTCTCAGCTACGGAATAGTGTGTCTCCTGTGGGTGTGACCTCGGAGGCTCTT
CCTCAGGAGCTGAAGTCAGAATCCGAAACCACCAACTCTACTGCAATGACTGCTATCTCCGATTCAAATC
TGGACGGCCAACCGCCATGTGATGTAAACCCCCATTCGAAAGCGCTGTTGCAGATAGAAGAGGAGGCGCT
TGTCACTGATGCAGAGCTATAA

Translation (1453 aa):
MQDYNKDDMSYRRISAIEPKSALPFNRFLPNKSKQPSYVPAPLRKKRPDKHEDNRRSWASPVYTETDGTF
SSTQRRTWGPKMETWHTVQETSTSSWCVEEEEEKLTRMPNIVKDDLYVRKLSPVMPSPGSSFDQFLPKCW
TPEDMNWKKIKRETYKPWYKEFQGFSQFLLLQALQTYSDDILSSETSVKLDPTSGPRLITRRKNRSPAPG
YRAHDLELPALDPDLENDDFFVRKTGAFHANPCVLRAFEDFRSFSEPDDAVERDIILQCREGELVLPDLE
KDDMIVRRIPAQKKEVPLSGAPDRYQPVPFPEPWTLPPEIQAKFLSVLERTRPPKEQSSGCRVLVPSYRQ
KKDDMLARKIQSWKLGTAVPPISFKPGPCSEADLQKWEAIWEASRLRHRKRLMVERLFQKIYGENGSKSM
SDVSAEDVQNLRQVRYEEMQKIKSQLKEQDQKWQDDLAKWKNRRKSYTSDLQKKKEEREEIEKQALEKSD
RSSKTFREMLQDRESRGSTVTSWRRTYSSDDILDDGVLPPTVTLSETSYQSERLEDEARAHPAEMPKEDS
TTFANREDSVVAETQLASHSPEEQRLAPSPSEEPRQASGSSAEPHQAPLLSTEPRRTPLPSEEPHQASLS
STLQRPSSLSSQQSWSTRAESTRISASLPRSYQRTDTARLTSVVTARPFGTSSRGISSLPRSYTMDDGWK
YNGDVEVVKREQLDLGRATGPKPDSSHFISGSASEKEVIATEDVASLSSPTLPSSSLSHDRAVSSKATFS
SMSGLDSVSDSGEGRGSPLREVSRSLDQFSDMRVSINQTPGNKPVFGFTIKWDISGIFVASVEQGSPAEF
SQLQVDDEILAINNTKFSYKDTKKWEEVMANAQETGNLVMDVRRYGKSGSSETKWIDTTSGIYNSDKSSS
LSVTTDFSESLQSPYTESKEVNGIHEESNPFDSKASESISLKNLKRRSQFFEQGSSDSVAPDLPVPTLSA
PSRWAWDQEEERRRQERWQKEQDRLLQEKYQREQEKLREEWQRAQQEAERENSKYLDEELMVLNSNSISL
TSREPVAATWEATWSEGSKSLDSEGTRAGEEDRGQLEDDAVYEDQSQKLQELEQEKKRKEQEAQEEERRK
QREAQAWAEAEAKAWAEAQARAEAEAKARAEAQARAEAEAQKRAEAQKLQAERERETSVKIYQYRRPIDS
YDLPKREDDTSGMLPTDRSKSRSTTELNDPLIEKNGSSKYSERIGATSFSHRSSKKDQAPSEAELERQQI
LQEMRKRTSLHNDNSWIRQRSASVNKEPICLPGIMRRGESLDNLDSQRPGSWRQSPWHSQPAGVYASSSV
QDFSRPPPQLLSTSNRAYMRNPSSAVPPPAGSVKTSPGSPSPRSHSPSMSQSGSQLRNSVSPVGVTSEAL
PQELKSESETTNSTAMTAISDSNLDGQPPCDVNPHSKALLQIEEEALVTDAEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH