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Report for CCDS84168.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84168.1 Public Mus musculus 15 Lrp12 23 108 98 CCDS HistoryNCBI Gene:239393Re-query CCDS DB by CCDS ID:84168.1Re-query CCDS DB by GeneID:239393See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84168.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110305.2 ENSMUSP00000105934.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110305.2Link to Ensembl Protein Viewer:ENSMUSP00000105934.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110305Re-query CCDS DB by Protein ID:ENSMUSP00000105934
Original member Current member NCBI NM_001347036.2 NP_001333965.1 Accepted alive Link to Nucleotide Sequence:NM_001347036.2Link to Protein Sequence:NP_001333965.1Re-query CCDS DB by Nucleotide ID:NM_001347036Re-query CCDS DB by Protein ID:NP_001333965Link to BLAST:NP_001333965.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001333965.1 839 Q8BUJ9-2 839 100% 0 0

Chromosomal Locations for CCDS 84168.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 39872015 39872878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39876087 39876219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39877795 39878899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39880120 39880322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39885006 39885141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39943604 39943682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2520 nt):
ATGGCCCGTCGCTGGAGCACAAAAGAGTCTCAGCGGCGGGGGTCGGCGTGGCTCTTGCTTTTCCTCGCTG
GGGTGTACGCTTGTGGGGAGAGTCCAGAACAAATTCGAGCACCGAGTGGAATAATCACGAGTCCAGGCTG
GCCTTCAGACTATCCTGCCCAAGTCAACTGCAGCTGGCTCATAAGGGCAAACCCAGGGGAGATCATTACT
ATAAGTTTTCAGGATTTTGATATCCAGGGGTCCAGAAGATGCACTTTGGACTGGCTGACAATAGAAACAT
ACAAGAATATTGAAAGTTACCGAGCGTGTGGGTCCACAATTCCGCCACCATATATCTCTTCCCAAGACCA
CGTTTGGATCCGGTTCCACTCAGATGACAGCGTGTCCAGGAAAGGCTTCAGGCTGGCGTATTTTTCAGGG
AAATCTGAGCAGCCAGACTGTGCCTGTGATCAGTTCCGCTGTGGAAATGGAAAGTGTATTCCAGAAGCCT
GGAAGTGCAACAGCATGGACGAGTGTGGAGACAGTTCTGACGAGGAGGTCTGTGCCAGCGATGCTCACCC
CCCAACCACGACTGCTTTCCAACCCTGTGCCTACAACCAGTTCCAGTGTCTGTCCCGCTTCACCAAAGTT
TACACGTGTCTCCCTGAGTCCTTAAAGTGTGATGGGAACATTGACTGCCTGGACCTAGGAGACGAGATAG
ACTGTGACATGCCGACATGCGGACAATGGTTAAAATACTTCTATGGCACCTTCAATTCTCCCAACTACCC
CGACTTTTATCCTCCTGGAAGTAACTGCACCTGGCTGATAGACACTGGTGATCATCGGAAAGTCATCTTA
CGGTTCACTGACTTTAAACTTGATGGTACCGGGTATGGTGATTATGTCAAAATATATGACGGACTGGAGG
AGAATCCTCGCAAGCTCTTGCGGGTGCTAACTGCTTTCGATTCTCACGCTCCTCTGACGGTCGTTTCTTC
CTCCGGACAGATAAGAGTACATTTCTGTGCTGATAAAGTGAATGCTGCAAGAGGGTTCAACGCTACTTAC
CAAGTCGATGGCTTCTGTTTGCCATGGGAAATACCCTGTGGGGGCAACTGGGGGTGCTACACAGAGCAGC
AGCGCTGTGACGGGTACTGGCATTGCCCAAACGGAAGGGATGAAATCAATTGTACCATGTGCCAAAAGGA
AGAATTTCCATGTTCTCGAAATGGTGTCTGCTACCCTCGTTCTGATCGCTGCAACTACCAAAACCATTGT
CCGAACGGCTCTGATGAAAAAAACTGCTTCTTTTGCCAGCCAGGGAATTTCCACTGTAAGAACAACCGCT
GTGTGTTTGAAAGCTGGGTGTGTGATTCCCAGGATGACTGCGGTGACGGCAGTGACGAGGAGAACTGCCC
AGTCATTGTGCCTACCAGAGTCATAACAGCAGCAGTCATCGGGAGCCTCATCTGTGGCCTGCTGCTCGTC
ATTGCATTGGGGTGCACTTGCAAGCTTTATTCTCTGAGAATGTTTGAACGGAGATCATTTGAGACCCAGT
TGTCACGCGTGGAAGCAGAACTTCTCCGAAGAGAGGCTCCTCCCTCATATGGACAGTTGATCGCTCAGGG
ACTAATCCCACCCGTAGAAGATTTTCCTGTCTGTTCACCTAATCAGGCTTCCGTTTTAGAAAACCTGAGG
CTAGCTGTCCGATCTCAGCTGGGATTTACTTCAATCAGGCTTCCTATGACAGGCAGATCTAGCAACATTT
GGAATCGTATTTTTAATTTTGCAAGATCCCGTCATTCAGGGTCATTGGCTTTGGTCTCGGGAGATGGAGA
TGAGGTTGTCCCTAGCCAGAGCAGCAGCAGAGAAACTGAGAGGAGTCGCCCTCACAGAAGCTTATTCTCC
GTGGAGTCCGATGACACTGACACAGAAAATGAGAGAAGGGATACGGCGGGAGCATCGGGTGGGGTTGCAG
CACCGTTGCCCCAGAAGGTCCCTCCCACGACCGCCGTGGAGGCCACAGTGGGATCAGGTGGGAATTCCTC
TGCTCAGAGCACCAGAGGTGGCCATGCAGATGGAAGGGAAGTGTCAAGTGTGGAAGCCCCGAGTGTGAGC
CCAGCACGTCACCAGCTCACAAGTGCTTTAAGTCGGATGACTCAGGGCCTGCGCTGGGTCCGCTTTACAC
TAGGTCGATCGAGCTCCACTACCCAGAACCGGAGTCCTTTGAGACAGCTGGACACCGCAGTGAGTGGACG
AGAAGACGACGATGACGTCGAAATGCTAATTCCAGTTTCAGACGGAGCTTCGGACATTGATGCCAATGAC
TGCTCCAGACCTCTTCTTGACCTTGCCTCAGACCAAGTACAAGGGTTTAGACAGCCACACAGTGCAGGAA
ACCCTGGAGTGAGAACAAGTAACCGGGACGGCCCCTGCGAGCGCTGTGGCATTGTGCACACAGCCCAGAT
ACCAGACACTTGCTTAGAAGCCACAGTGAAGACGGAAACGAGTGATGACGAGGCTTTGCTGCTGTGTTAG

Translation (839 aa):
MARRWSTKESQRRGSAWLLLFLAGVYACGESPEQIRAPSGIITSPGWPSDYPAQVNCSWLIRANPGEIIT
ISFQDFDIQGSRRCTLDWLTIETYKNIESYRACGSTIPPPYISSQDHVWIRFHSDDSVSRKGFRLAYFSG
KSEQPDCACDQFRCGNGKCIPEAWKCNSMDECGDSSDEEVCASDAHPPTTTAFQPCAYNQFQCLSRFTKV
YTCLPESLKCDGNIDCLDLGDEIDCDMPTCGQWLKYFYGTFNSPNYPDFYPPGSNCTWLIDTGDHRKVIL
RFTDFKLDGTGYGDYVKIYDGLEENPRKLLRVLTAFDSHAPLTVVSSSGQIRVHFCADKVNAARGFNATY
QVDGFCLPWEIPCGGNWGCYTEQQRCDGYWHCPNGRDEINCTMCQKEEFPCSRNGVCYPRSDRCNYQNHC
PNGSDEKNCFFCQPGNFHCKNNRCVFESWVCDSQDDCGDGSDEENCPVIVPTRVITAAVIGSLICGLLLV
IALGCTCKLYSLRMFERRSFETQLSRVEAELLRREAPPSYGQLIAQGLIPPVEDFPVCSPNQASVLENLR
LAVRSQLGFTSIRLPMTGRSSNIWNRIFNFARSRHSGSLALVSGDGDEVVPSQSSSRETERSRPHRSLFS
VESDDTDTENERRDTAGASGGVAAPLPQKVPPTTAVEATVGSGGNSSAQSTRGGHADGREVSSVEAPSVS
PARHQLTSALSRMTQGLRWVRFTLGRSSSTTQNRSPLRQLDTAVSGREDDDDVEMLIPVSDGASDIDAND
CSRPLLDLASDQVQGFRQPHSAGNPGVRTSNRDGPCERCGIVHTAQIPDTCLEATVKTETSDDEALLLC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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