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Report for CCDS84193.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84193.1 Public Mus musculus 15 Slc4a8 23 108 98 CCDS HistoryNCBI Gene:59033Re-query CCDS DB by CCDS ID:84193.1Re-query CCDS DB by GeneID:59033See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84193.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000162049.1 ENSMUSP00000125090.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162049.1Link to Ensembl Protein Viewer:ENSMUSP00000125090.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162049Re-query CCDS DB by Protein ID:ENSMUSP00000125090
Original member Current member NCBI NM_001347102.1 NP_001334031.1 Accepted alive Link to Nucleotide Sequence:NM_001347102.1Link to Protein Sequence:NP_001334031.1Re-query CCDS DB by Nucleotide ID:NM_001347102Re-query CCDS DB by Protein ID:NP_001334031Link to BLAST:NP_001334031.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334031.1 1037 Q8JZR6-2 1037 100% 0 0

Chromosomal Locations for CCDS 84193.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 100782975 100783095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100783787 100783922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100784715 100784875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100787164 100787352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100788160 100788245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100789010 100789167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100789835 100789922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100790906 100791052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100791597 100791697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100795763 100795937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100796505 100796638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100797993 100798238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100799647 100799752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100800480 100800641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100803235 100803348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100806250 100806411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100807201 100807452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100809295 100809363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100810594 100810767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100811543 100811674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100813107 100813198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100814450 100814545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100815619 100815631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3114 nt):
ATGCCGCTGGGGAGGCAGAGCCATCGGCACCACCGCACTCATGGCCAGAAGCACCGGAGACGAGGAGGGC
GGGGCAAAGGAGCCAGCCAGGGCGAGGAGGGCTTGGAAGCCTTGGCCCACGACACCCCGTCTCAGCGTGT
TCAGTTCATTCTTGGCACTGAGGAAGATGAAGAACATGTGCCTCATGAGCTCTTCACAGAGCTGGACGAG
ATCTGTATGAAAGAGGGGGAAGATGCTGAGTGGAAGGAGACGGCCAGGTGGCTGAAGTTTGAAGAGGATG
TGGAGGACGGGGGAGAGCGCTGGAGCAAGCCTTACGTGGCCACGCTCTCTCTGCACAGCCTGTTTGAGCT
GAGGAGCTGCCTCATCAACGGCTCTGTGCTTCTGGACATGCGTGCAAGTAGCATAGAGGAGATCTCAGAC
CTGATCCTGGACCAGCAGGAGCTGCTCCGAGACCTGAGCGACAGCGTGAGGGTTAAAGTGCGGGAAGCCC
TGCTGAAGAAGCACCACCACCAGAACGAGAGGAGGAGGAACAACCTCATCCCCATCGTCCGCTCCTTCGC
TGAGGTTGGCAAGAAGCAGTCTGACCCGCACTCCATGGACAGAGATGGGCAAACGGTGTCTCCTCAGTCA
GCTACAAACCTTGAAGTGAAGAATGGTGTGAACTGTGAGCACAGCCCTGTGGATCTAAGCAAGGTGGATC
TTCACTTCATGAAAAAAATTCCCACGGGGGCAGAGGCCTCCAATGTCCTGGTGGGAGAGGTGGATACGCT
GGACCGGCCCATCGTGGCCTTCGTGAGGCTCTCCCCGGCTGTGCTGCTCTCTGGCCTGACGGAAGTGCCC
ATCCCAACGAGGTTTTTGTTTATCTTACTGGGCCCAGTGGGAAAAGGGCAGCAGTACCATGAGATTGGCA
GGTCCATGGCCACCATCATGACGGACGAGATTTTTCATGATGTGGCATATAAAGCAAAGGAACGCGATGA
CCTCCTGGCAGGGATTGACGAGTTCCTGGACCAGGTGACGGTGCTTCCGCCAGGGGAGTGGGACCCATCT
ATTAGAATTGAGCCACCCAAGAATGTCCCTTCCCAGGAAAAAAGGAAAATGCCCGGTGTTCCAAACGGAA
ACGTTTGCCACATAGAACCAGAGCCACATGGGGGGCACAGTGGGCCAGAACTGGAGCGGACTGGGCGGCT
GTTTGGGGGCTTGGTGCTGGATGTCAAGCGGAAGGCTCCCTGGTACTGGAGTGACTACCGGGATGCTCTC
AGCTTACAGTGTCTGGCCTCCTTCCTGTTCCTGTACTGTGCCTGCATGTCGCCCGTTATCACCTTCGGGG
GACTGCTGGGAGAAGCCACTGAAGGACGCATAAGTGCGATTGAGTCGTTGTTTGGAGCGTCCATGACGGG
GATTGCCTACTCTCTGTTTGCTGGGCAGCCTCTCACCATCCTGGGAAGCACGGGGCCCGTGCTGGTGTTT
GAAAAGATTTTGTTCAAATTCTGCAAGGACTATGCCCTTTCGTACCTGTCCCTGCGGGCTCTCATCGGGC
TGTGGACTGCCTTCCTGTGCATCGTCCTGGTGGCCACGGATGCCAGCTCCCTCGTCTGCTACATTACCCG
CTTCACCGAGGAAGCGTTTGCCTCCCTGATTTGTATCATCTTCATCTATGAAGCCATAGAAAAGCTGATC
CACCTGGCAGAGACCTACCCCATCCACATGCACAGCCAGCTGGACCACCTGAGCCTCTATTACTGCAGGT
GTGTGCTCCCGGAGAATCCAAACAACCACACCTTACAGTATTGGAAGGACCACAACATCCTGGCTGCCGA
AGTGAACTGGGCAAACCTGACAGTCAGCGAATGCCAGGAGATGCACGGGGAGTTCATGGGATCTGCCTGC
GGTCACCACGGACCCTACACGCCCGACGTGCTCTTTTGGTCCTGCATTCTGTTCTTCGCCACCTTCATCG
TCTCCAGCACCTTAAAGACATTTAAGACAAGCCGCTACTTCCCGACCAGGGTCCGCTCCATGGTGAGTGA
CTTCGCCGTGTTCCTCACCATCTTCACCATGGTGGTCCTTGACTTTCTGATTGGCGTCCCGTCGCCAAAG
CTTCAGGTTCCCAATGTGTTCAAGCCAACAAGGGACGATCGAGGATGGTTTATTAATCCCATTGGCCCCA
ATCCCTGGTGGACTGTGATAGCCGCAATTATCCCAGCTCTCCTGTGCACTATCCTGATATTCATGGACCA
GCAGATCACCGCTGTCATCATTAACAGGAAGGAACACAAGCTCAAGAAAGGCTGTGGCTACCACCTGGAC
CTGCTCATGGTGGCCGTCATGCTGGGAGTTTGCTCCATCATGGGCCTGCCTTGGTTTGTGGCCGCGACCG
TCCTGTCCATTACCCATGTGAACAGCCTCAAGCTGGAATCCGAATGCTCTGCCCCCGGGGAGCAGCCCAA
GTTCTTGGGCATCCGGGAACAGAGAGTCACAGGGCTTATGATCTTCGTGCTGATGGGCTGCTCAGTCTTC
ATGACAGCTGTCTTAAAGTTTATCCCGATGCCAGTGCTCTACGGAGTTTTCCTCTACATGGGAGTCTCTT
CGCTACAAGGAATCCAGTTCTTCGACCGTCTGAAGCTTTTCGGGATGCCTGCAAAACACCAGCCAGACTT
CATCTACCTGCGGCACGTGCCGCTGCGCAAGGTGCACCTGTTCACGCTAGTGCAGCTCACCTGCCTCGTC
CTGCTCTGGGTCATCAAGGCATCGCCGGCCGCCATTGTTTTCCCAATGATGGTGCTGGCCTTGGTCTTCG
TCAGGAAAGTCATGGATCTCTGCTTCTCCAAGCGTGAGCTAAGCTGGCTGGACGACCTCATGCCTGAGAG
CAAAAAGAAGAAGCTGGACGATGCGAAGAAGAAGGAGGAGGAGGAGGCCGAGAAGATGTTGGACATTGGG
GGTGACAAGTTTCCCCTGGAAAGCAGGAAGCTGCTAAGTAGTCCTGGCAAGAGCAGCAGCTTCAGATGTG
ACCCTTCTGAGATTAATATATCAGATGAAATGCCTAAAACCACGGTCTGGAAGGCTCTCAGCATAAATTC
CGGAAATACAAAAGAAAAAAGCCCCTTCAACTGA

Translation (1037 aa):
MPLGRQSHRHHRTHGQKHRRRGGRGKGASQGEEGLEALAHDTPSQRVQFILGTEEDEEHVPHELFTELDE
ICMKEGEDAEWKETARWLKFEEDVEDGGERWSKPYVATLSLHSLFELRSCLINGSVLLDMRASSIEEISD
LILDQQELLRDLSDSVRVKVREALLKKHHHQNERRRNNLIPIVRSFAEVGKKQSDPHSMDRDGQTVSPQS
ATNLEVKNGVNCEHSPVDLSKVDLHFMKKIPTGAEASNVLVGEVDTLDRPIVAFVRLSPAVLLSGLTEVP
IPTRFLFILLGPVGKGQQYHEIGRSMATIMTDEIFHDVAYKAKERDDLLAGIDEFLDQVTVLPPGEWDPS
IRIEPPKNVPSQEKRKMPGVPNGNVCHIEPEPHGGHSGPELERTGRLFGGLVLDVKRKAPWYWSDYRDAL
SLQCLASFLFLYCACMSPVITFGGLLGEATEGRISAIESLFGASMTGIAYSLFAGQPLTILGSTGPVLVF
EKILFKFCKDYALSYLSLRALIGLWTAFLCIVLVATDASSLVCYITRFTEEAFASLICIIFIYEAIEKLI
HLAETYPIHMHSQLDHLSLYYCRCVLPENPNNHTLQYWKDHNILAAEVNWANLTVSECQEMHGEFMGSAC
GHHGPYTPDVLFWSCILFFATFIVSSTLKTFKTSRYFPTRVRSMVSDFAVFLTIFTMVVLDFLIGVPSPK
LQVPNVFKPTRDDRGWFINPIGPNPWWTVIAAIIPALLCTILIFMDQQITAVIINRKEHKLKKGCGYHLD
LLMVAVMLGVCSIMGLPWFVAATVLSITHVNSLKLESECSAPGEQPKFLGIREQRVTGLMIFVLMGCSVF
MTAVLKFIPMPVLYGVFLYMGVSSLQGIQFFDRLKLFGMPAKHQPDFIYLRHVPLRKVHLFTLVQLTCLV
LLWVIKASPAAIVFPMMVLALVFVRKVMDLCFSKRELSWLDDLMPESKKKKLDDAKKKEEEEAEKMLDIG
GDKFPLESRKLLSSPGKSSSFRCDPSEINISDEMPKTTVWKALSINSGNTKEKSPFN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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