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Report for CCDS84320.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84320.1 Public Mus musculus 17 Nfya 23 108 98 CCDS HistoryNCBI Gene:18044Re-query CCDS DB by CCDS ID:84320.1Re-query CCDS DB by GeneID:18044See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84320.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000159063.7 ENSMUSP00000124404.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159063.7Link to Ensembl Protein Viewer:ENSMUSP00000124404.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159063Re-query CCDS DB by Protein ID:ENSMUSP00000124404
Original member NCBI NM_001347402.1 NP_001334331.1 Updated not alive Link to Nucleotide Sequence:NM_001347402.1Link to Protein Sequence:NP_001334331.1Re-query CCDS DB by Nucleotide ID:NM_001347402Re-query CCDS DB by Protein ID:NP_001334331
Current member NCBI NM_001347402.2 NP_001334331.1 Accepted alive Link to Nucleotide Sequence:NM_001347402.2Link to Protein Sequence:NP_001334331.1Re-query CCDS DB by Nucleotide ID:NM_001347402Re-query CCDS DB by Protein ID:NP_001334331Link to BLAST:NP_001334331.1

Chromosomal Locations for CCDS 84320.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 48389289 48389342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48391249 48391350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48391876 48392049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48392340 48392488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48393180 48393285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48393421 48393552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48395650 48395796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48400438 48400512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGAGCAGTATACGACAAACAGCAATAGTTCCACAGAGCAGATCGTGGTGCAGGCCGGCCAGATTCAGC
AGCAGGTCCAGGGGCAGCCGTTAATGGTGCAAGTCAGTGGAGGCCAGCTTATTACATCAACAGGCCAACC
CATCATGGTACAGGCTGTGCCTGGTGGACAAGGCCAAACCATCATGCAAGTACCTGTGTCTGGAACACAA
GGTTTACAGCAGATACAGTTGGTGCCTCCTGGACAGATCCAGATTCAGGGTGGGCAGGCTGTGCAGGTGC
AAGGCCAGCAGGGTCAAACCCAGCAGATCATCATCCAACAGCCACAGACTGCAGTCACTGCTGGCCAGAC
TCAGACACAACAACAGATTGCTGTCCAGGGACAGCAAGTGGCCCAGACTGCTGAAGGACAGACTATTGTC
TACCAACCAGTTAATGCAGATGGCACAATTCTCCAGCAAGGCATGATCACCATCCCAGCAGCCAGTTTGG
CAGGGGCACAGATCGTTCAGACAGGAGCCAATACCAACACAACCAGCAGTGGACAAGGGACGGTCACTGT
GACACTGCCTGTGGCAGGGAATGTGGTCAACTCAGGAGGAATGGTCATGATGGTACCAGGAGCTGGCTCT
GTGCCTGCTATCCAAAGAATCCCTTTACCTGGAGCAGAGATGCTGGAAGAAGAGCCCCTGTATGTGAATG
CCAAACAGTATCACCGCATCCTTAAGAGGAGACAAGCACGGGCTAAGCTAGAGGCAGAAGGGAAAATCCC
AAAGGAACGAAGGAAATACCTCCATGAGTCTCGGCATCGGCACGCCATGGCACGGAAGCGTGGGGAAGGG
GGCCGCTTCTTCTCTCCAAAAGAAAAGGACAGTCCTCACATGCAGGATCCAAACCAAGCTGACGAAGAAG
CCATGACACAGATCATCCGAGTTTCCTAA

Translation (312 aa):
MEQYTTNSNSSTEQIVVQAGQIQQQVQGQPLMVQVSGGQLITSTGQPIMVQAVPGGQGQTIMQVPVSGTQ
GLQQIQLVPPGQIQIQGGQAVQVQGQQGQTQQIIIQQPQTAVTAGQTQTQQQIAVQGQQVAQTAEGQTIV
YQPVNADGTILQQGMITIPAASLAGAQIVQTGANTNTTSSGQGTVTVTLPVAGNVVNSGGMVMMVPGAGS
VPAIQRIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEG
GRFFSPKEKDSPHMQDPNQADEEAMTQIIRVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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