NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS84339.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84339.1 Public Mus musculus 17 Nrxn1 23 108 98 CCDS HistoryNCBI Gene:18189Re-query CCDS DB by CCDS ID:84339.1Re-query CCDS DB by GeneID:18189See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84339.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000197268.4 ENSMUSP00000142815.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000197268.4Link to Ensembl Protein Viewer:ENSMUSP00000142815.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000197268Re-query CCDS DB by Protein ID:ENSMUSP00000142815
Original member NCBI NM_001346962.1 NP_001333891.1 Updated not alive Link to Nucleotide Sequence:NM_001346962.1Link to Protein Sequence:NP_001333891.1Re-query CCDS DB by Nucleotide ID:NM_001346962Re-query CCDS DB by Protein ID:NP_001333891
Current member NCBI NM_001346962.2 NP_001333891.1 Accepted alive Link to Nucleotide Sequence:NM_001346962.2Link to Protein Sequence:NP_001333891.1Re-query CCDS DB by Nucleotide ID:NM_001346962Re-query CCDS DB by Protein ID:NP_001333891Link to BLAST:NP_001333891.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001333891.1 139 Q9CS84-6 139 100% 0 0

Chromosomal Locations for CCDS 84339.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 90037077 90037384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 90059485 90059563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 90088165 90088197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (420 nt):
ATGGATATGAGATGGCACTGTGAAAACTCGCAGACCACAGATGACATCCTTGTGGCCTCGGCAGAGTGTC
CCAGTGACGATGAGGACATTGACCCCTGTGAGCCGAGCTCAGCCAACCCCACCAGAGTAGGTGGCCGTGA
ACCATACCCAGGCTCTGCAGAGGTGATTCGGGAGTCCAGCAGTACCACTGGCATGGTGGTGGGGATTGTC
GCAGCAGCCGCTCTGTGCATCCTCATCCTCCTCTATGCCATGTACAAGTACAGGAACCGGGATGAAGGGT
CGTACCACGTGGATGAGAGTCGAAACTACATCAGTAACTCAGCACAGTCCAATGGGGCTGTGGTCAAGGA
GAAGCAACCCAGCAGTGCTAAAAGCGCCAACAAAAACAAGAAAAACAAGGATAAGGAGTATTACGTCTGA

Translation (139 aa):
MDMRWHCENSQTTDDILVASAECPSDDEDIDPCEPSSANPTRVGGREPYPGSAEVIRESSSTTGMVVGIV
AAAALCILILLYAMYKYRNRDEGSYHVDESRNYISNSAQSNGAVVKEKQPSSAKSANKNKKNKDKEYYV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH