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Report for CCDS84340.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84340.1 Public Mus musculus 17 Nrxn1 23 108 98 CCDS HistoryNCBI Gene:18189Re-query CCDS DB by CCDS ID:84340.1Re-query CCDS DB by GeneID:18189See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84340.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000159778.7 ENSMUSP00000125561.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159778.7Link to Ensembl Protein Viewer:ENSMUSP00000125561.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000159778Re-query CCDS DB by Protein ID:ENSMUSP00000125561
Original member NCBI NM_001346960.1 NP_001333889.1 Updated not alive Link to Nucleotide Sequence:NM_001346960.1Link to Protein Sequence:NP_001333889.1Re-query CCDS DB by Nucleotide ID:NM_001346960Re-query CCDS DB by Protein ID:NP_001333889
Current member NCBI NM_001346960.2 NP_001333889.1 Accepted alive Link to Nucleotide Sequence:NM_001346960.2Link to Protein Sequence:NP_001333889.1Re-query CCDS DB by Nucleotide ID:NM_001346960Re-query CCDS DB by Protein ID:NP_001333889Link to BLAST:NP_001333889.1

Chromosomal Locations for CCDS 84340.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 90037077 90037384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 90059476 90059563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 90162114 90162433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 90208323 90208494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 90362760 90362941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 90454806 90455052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1317 nt):
ATGTACCAGAGGATGCTTCGGTGCGGCGCCGATCTGGGATCGCCCGGGGGCGGCAGTGGCGGCGGCGCAG
GGGGGCGCCTGGCCCTGATCTGGATAGTCCCGCTCACCCTCAGCGGCCTCCTAGGAGTGGCCTGGGGGGC
ATCCAGTTTGGGAGCGCACCACATCCACCATTTCCATGGCAGCAGCAAGCATCATTCAGTGCCTATTGCA
ATCTACAGGTCACCAGCATCCTTGCGAGGCGGACACGCTGGGACAACATATATCTTTAGCAAAGGTGGTG
GACAGATTACATATAAGTGGCCTCCCAATGACCGCCCCAGTACACGAGCAGACAGGCTGGCCATCGGATT
TAGCACTGTCCAGAAGGAAGCCGTGTTGGTGCGTGTGGACAGTTCCTCAGGACTGGGTGACTACCTGGAG
CTGCACATACACCAAGGAAAAATTGGAGTTAAGTTTAATGTTGGGACAGATGACATCGCCATCGAAGAGT
CTAATGCAATCATTAATGATGGGAAATACCATGTAGTACGTTTCACAAGGAGTGGTGGCAATGCCACGTT
ACAGGTGGACAGCTGGCCAGTTATCGAACGCTACCCTGCAGGGCGTCAGCTCACAATCTTCAATAGCCAA
GCAACCATAATAATTGGCGGGAAAGAGCAGGGCCAGCCCTTCCAGGGCCAGCTCTCTGGTCTTTACTACA
ATGGCTTGAAAGTTCTGAATATGGCAGCAGAGAACGATGCCAACATCGCCATAGTGGGGAATGTGAGGCT
GGTCGGTGAAGTGCCTTCCTCTATGACAACTGAGTCGACAGCCACTGCCATGCAGTCTGAGATGTCCACC
TCAATCATGGAGACCACCACAACCCTGGCTACCAGCACAGCTAGAAGAGGCAAGCCCCCCACAAAGGAAC
CCATCAGCCAGACCACAGATGACATCCTTGTGGCCTCGGCAGAGTGTCCCAGTGACGATGAGGACATTGA
CCCCTGTGAGCCGAGCTCAGGTGGGTTAGCCAACCCCACCAGAGTAGGTGGCCGTGAACCATACCCAGGC
TCTGCAGAGGTGATTCGGGAGTCCAGCAGTACCACTGGCATGGTGGTGGGGATTGTCGCAGCAGCCGCTC
TGTGCATCCTCATCCTCCTCTATGCCATGTACAAGTACAGGAACCGGGATGAAGGGTCGTACCACGTGGA
TGAGAGTCGAAACTACATCAGTAACTCAGCACAGTCCAATGGGGCTGTGGTCAAGGAGAAGCAACCCAGC
AGTGCTAAAAGCGCCAACAAAAACAAGAAAAACAAGGATAAGGAGTATTACGTCTGA

Translation (438 aa):
MYQRMLRCGADLGSPGGGSGGGAGGRLALIWIVPLTLSGLLGVAWGASSLGAHHIHHFHGSSKHHSVPIA
IYRSPASLRGGHAGTTYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLE
LHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQ
ATIIIGGKEQGQPFQGQLSGLYYNGLKVLNMAAENDANIAIVGNVRLVGEVPSSMTTESTATAMQSEMST
SIMETTTTLATSTARRGKPPTKEPISQTTDDILVASAECPSDDEDIDPCEPSSGGLANPTRVGGREPYPG
SAEVIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYHVDESRNYISNSAQSNGAVVKEKQPS
SAKSANKNKKNKDKEYYV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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